Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03152 ATGAATCACATACCTCGAATTTTCGGTTATAAAAAGCAACAACCAACGGACATGAACTCGAAGAAGAAGACTCCAAGGAAGCAACCGAAATTGGAACGCCGTAATGCCACGAAGAATTTCAACTACGATGCTCAACCGTCGTCGCCGGAATCCACCGAGTCAGCGTCAATTCTCTGCACTCGATCGATGGATTTATACGATAAAAAGAGCTTTCGAGTTGAGGGCGTCGACGGTGAGTTTGACATCATTTGCCGGAGTCTTGGACTTTCAGGACCGGAGGATTTTTCAATTCCGGCGGCGGCTTGGGAGGCAATGAAAGTTCGGTCTTCGTCGGATGTTCTTCCGAGGCTGAATTTGTCTGATTTTGATGAAACGAAGGTTATTGAAGAAATTGGAGTTGTAGAGTTCGAAGATAGGGTTTCGATTAGAGATTCTCCTGCTGAGACTAGTGGTTGCTGCAACGCGGGCGATGATGGTGGAAAAAGTAGGGTTTCGATTAGGGTTTTTGATGAAGTTAGCAGTAGCTGTACCGGCAACGAAAATAGGGTTCCGATTAGGGGTTTTGTTGAGATGAATGCTTGCTCCACCGGCGGTGGGGGTGGTATCAAGGGATTTAGACCTCCGATGCTAAAGCCGCCGCCGGGTGTTAGGGTTTCTGTTGTAGACAATACGTGTTCCACATGGGATCTTTTGAGGGATTTTGCTCCGGAAGGGGAAGGAAAAGAGAGAGAAGATGTGGAAGAGAAGAAAGATGAAGTAGAAGAGGAAGTTGGTGGAGTGAGATTGAAGATAGAAGAAGAGGAAACTGCTGAGATTATTGGTGAGTTTTCGAGGTCGTGTTCATTCACTACTTCACACGAAGATGATTCATCGAGCTTTACAACGGATACTAGGTCTAATAGTATATCTCCTAATGTGAGATTCAAGCCAGTTATTACTCCTGGTAGCTGGCAAAAGGGTGAGCTTTTGGGGCGAGGTTCATTTGGATCTGTATATGAAGGAATTTCTGAAGATGGATTCTTTTTTGCTGTAAAACAAGTTTCACTGCTTGATCAAGGGAGTCAGGGAAAGCAAAGTGTCATTCAACTGGAGCACGAAATTGCAGTTTTGAGTCAGTTGGAACATGAGAATATAGTTCGATACATTGGCACTGAAATGGATGAATCAAATCTATATATCTTTATCGAGTTTGTAACCAAAGGTTCGCTGTTAAGCCTCTACCGGAGATATAAACTTCGAGATTCCCAAGTATCTGCTTATACGAGACAGATTCTGCAGGGTTTAAAATATCTTCATGATCGCAATATTGTTCACAGGGATATTAAATGTGCAAATATATTGGTTGATGCAAATGGATCTGTCAAGGTTGCAGATTTTGGATTGGCAAAGGCAATTAAATTGAATGATATTAAATCATGCCAGGGAACTGCATTCTGGATGGCACCAGAGGTTGTAAGAGGAAAAGTTAAAGGTTATGGACTTCCAGCTGATATATGGAGTCTAGGGTGCACTGTGTTGGAGATGTTAACTGGGAAACTTCCATACTCTCCTATGGAATGTATCACCGCATTGTTTAGAATTGGAAAAGGAGAACTACCTCTGGTGCCTGATTCTCTTTCAAGAGATGCACGTGATTTCATCCTGCAATGTCTTAGAGTTAATCCAGATGACCGTCCCACTGCGGCTCAACTCTTAGACCACAAATTTGTCCAGAGGTCATTCTCCCAGTCATCTGACTCTGCATCTGCATCTCCACATATTCCGAGAAGAGGTTAA 1776 0.4336 MNHIPRIFGYKKQQPTDMNSKKKTPRKQPKLERRNATKNFNYDAQPSSPESTESASILCTRSMDLYDKKSFRVEGVDGEFDIICRSLGLSGPEDFSIPAAAWEAMKVRSSSDVLPRLNLSDFDETKVIEEIGVVEFEDRVSIRDSPAETSGCCNAGDDGGKSRVSIRVFDEVSSSCTGNENRVPIRGFVEMNACSTGGGGGIKGFRPPMLKPPPGVRVSVVDNTCSTWDLLRDFAPEGEGKEREDVEEKKDEVEEEVGGVRLKIEEEETAEIIGEFSRSCSFTTSHEDDSSSFTTDTRSNSISPNVRFKPVITPGSWQKGELLGRGSFGSVYEGISEDGFFFAVKQVSLLDQGSQGKQSVIQLEHEIAVLSQLEHENIVRYIGTEMDESNLYIFIEFVTKGSLLSLYRRYKLRDSQVSAYTRQILQGLKYLHDRNIVHRDIKCANILVDANGSVKVADFGLAKAIKLNDIKSCQGTAFWMAPEVVRGKVKGYGLPADIWSLGCTVLEMLTGKLPYSPMECITALFRIGKGELPLVPDSLSRDARDFILQCLRVNPDDRPTAAQLLDHKFVQRSFSQSSDSASASPHIPRRG 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03152 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Trre9g03152 591 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Trre9g03152 591 PRINTS Tyrosine kinase catalytic domain signature 430 448 IPR001245 GO:0004672|GO:0006468
Trre9g03152 591 PRINTS Tyrosine kinase catalytic domain signature 539 561 IPR001245 GO:0004672|GO:0006468
Trre9g03152 591 PRINTS Tyrosine kinase catalytic domain signature 395 408 IPR001245 GO:0004672|GO:0006468
Trre9g03152 591 PRINTS Tyrosine kinase catalytic domain signature 496 518 IPR001245 GO:0004672|GO:0006468
Trre9g03152 591 FunFam Mitogen-activated protein kinase 1, putative, expressed 315 583 - -
Trre9g03152 591 Coils Coil 243 270 - -
Trre9g03152 591 Pfam Protein kinase domain 318 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03152 591 ProSiteProfiles Protein kinase domain profile. 317 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03152 591 MobiDBLite consensus disorder prediction 16 37 - -
Trre9g03152 591 SUPERFAMILY Protein kinase-like (PK-like) 293 574 IPR011009 -
Trre9g03152 591 Gene3D Transferase(Phosphotransferase) domain 1 315 587 - -
Trre9g03152 591 SMART serkin_6 317 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03152 591 MobiDBLite consensus disorder prediction 38 55 - -
Trre9g03152 591 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 47 585 - -
Trre9g03152 591 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03152 Trre-Chr9 39883081 39890894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03152 21 574 MAP Kinase Kinase Kinase AT4G08500 52.462 1.73e-169 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre9g03152 Pkinase 2.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03152 K13414 - gmx:100819177 695.271