Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03144 ATGAACTCTTCATCATTATCAACTCAACTAATCGCGTCGAAAACGATGGAAATATATGAGCCATTCCATCAAGTGAGTATGTGGGAGGATAGCTTTAAAGTTGATCATAGCACTCTTAATTCAATTGCTTCACCAATGTTGAAGATGAACATTAGTAGCTTGGAGAACAAGTCTGAATATGTTCCTCATGAATCAAGAGAACCATCTGGAGATGATCAAGAAAGTACTGAAGAACCTGCTCCTAAGGTGCTAAGACGTCAAGCACAAAATCGCGAGGCTGCTAGGAAATGTCGACTGCGAAAGAAGGCTTATGTTGAACAATTGGAAACAAGTAGATTGAAGCTCATGCAATTGGAACTTGAGATTGAGAAAACAAGAAAACAGAGTTTGTACAGAAGCAATTCATTTGATGTCAGTTATATGGGATCATCTGGAATAATAAACCCTGGGATATCTTTATTTGAAATTGAATATGGACGCTGGATTGGATTGCAAGATAGACAAAATGAAGAACTAAGAAATGCATTGCAAACTAATGCATCTGATTTACAACTTCATCTACTTGTTGAGACTAGCTTGAACCAGTATTCAAATCTTTTTAGAATGAAAGCCGAAGCTGCAAAGGCTGATGTTTTCTATTTAATCTCGGGCGCATGGAAATCATCGGTAGAACGCCTTTTTCTTTGGATTGGAGGATCTCGTCCGTCACAAATTCTAAATATCGTCGTACCCAAGCTCGAGGCTTTAACTGATCAACAAATTGCGAGCATTAACAACCTCCGATTATCCTCTCAGCAAGCTGAAGATGCTCTTTCAATAGGGTTGGAGAAACTCCAACAAAGTATGATCCACAACATTCAAGCTGATCCCTTGGATTTCGGAAACTACGGATTTCAGATGGCTTCTGCCATGGACAAAGGAGAAGCAGTAGAAGGTTTTGTAATCCAGGCCGATCACCTTCGGCAACAAGCTTTGTTGTACATGTCTCGTATCTTGACAATCGGGCAATCAGCTAGAGGCTTTTTGGCTATGGGGGAATACTTTCAACGTATTCGCACTCTTAGTTCGTTGTGGACTGCTCGTTCATGCGATCATTTCTACCCTACTCAACACTCAAATTGA 1122 0.402 MNSSSLSTQLIASKTMEIYEPFHQVSMWEDSFKVDHSTLNSIASPMLKMNISSLENKSEYVPHESREPSGDDQESTEEPAPKVLRRQAQNREAARKCRLRKKAYVEQLETSRLKLMQLELEIEKTRKQSLYRSNSFDVSYMGSSGIINPGISLFEIEYGRWIGLQDRQNEELRNALQTNASDLQLHLLVETSLNQYSNLFRMKAEAAKADVFYLISGAWKSSVERLFLWIGGSRPSQILNIVVPKLEALTDQQIASINNLRLSSQQAEDALSIGLEKLQQSMIHNIQADPLDFGNYGFQMASAMDKGEAVEGFVIQADHLRQQALLYMSRILTIGQSARGFLAMGEYFQRIRTLSSLWTARSCDHFYPTQHSN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03144 373 SUPERFAMILY Leucine zipper domain 84 115 IPR046347 GO:0003700|GO:0006355
Trre9g03144 373 MobiDBLite consensus disorder prediction 59 91 - -
Trre9g03144 373 SMART brlzneu 78 138 IPR004827 GO:0003700|GO:0006355
Trre9g03144 373 Gene3D - 82 134 - -
Trre9g03144 373 PANTHER TRANSCRIPTION FACTOR TGA9 8 362 - -
Trre9g03144 373 FunFam BZIP family transcription factor 81 130 - -
Trre9g03144 373 Pfam bZIP transcription factor 80 112 IPR004827 GO:0003700|GO:0006355
Trre9g03144 373 MobiDBLite consensus disorder prediction 58 91 - -
Trre9g03144 373 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 80 115 IPR004827 GO:0003700|GO:0006355
Trre9g03144 373 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 85 100 IPR004827 GO:0003700|GO:0006355
Trre9g03144 373 ProSiteProfiles DOG1 domain profile. 151 361 IPR025422 GO:0006351|GO:0043565
Trre9g03144 373 Coils Coil 101 128 - -
Trre9g03144 373 Pfam Seed dormancy control 170 243 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03144 Trre-Chr9 39765554 39768814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03144 1 369 Calmodulin-binding Proteins AT5G65210 49.866 1.81e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre9g03144 DOG1 4.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03144 K14431 - gmx:100775882 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03144 9 39765554 39768814 Trre5g02268 5 17173525 17175429 PCT