Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03143 ATGGATCATAATAACTTGCAACAATCAATTTTGGGAGAAACAGCTTTTGAAGATTTTCTAACACATGCTAAGGCTTTTAATATGGGAAACCAAGATAATGTTCATGTTATTGGTGATGCAAATCAAGTTCCGTTCATTGGAATTGAATCAAAGTTAGCTGTCATGGCTTCACAGCCAGAACATTGGTTACCATTTCAAATGCCAATTCCAATACAGATGCAACAACATCATCAAGAGCATCAGAATCGACCGATAATTGAGATATGTCAAGATTTCAATGTTGCTAAACCGGTTTATGAGAACCAAATTATGGATATTGGTTACTCGGAAAATTCACTTGCCATGTCAATGCCAATAGGGGCAACAACAATGTCATTTCCATTGACTTGTTCAGATTCAAAGGGAGTTGTTACTGGTGCTGTTACTGATGATCGTGTCGGTGTTGGAAGAAAGCACAAGTACTCAGACGAGATGATGGAAAAGACTATCGAGAGGAGACAAAAGAGAATGGCAAAGAACCGTGAATCAGCTGCAAGATCAAGGGCAAAGAAACAGGAACACATAAATAAGTTACACGAGGACAGAGACCGGTTGCAGAAAATAAATATGGAACTCAAAATGAAGAAGAAAATTGATGAATGGTTGTTTCCAAATCTCACTCCAAGATACCAACTACGGCGTATAAGCTCGGCCAAATTCTAG 702 0.3846 MDHNNLQQSILGETAFEDFLTHAKAFNMGNQDNVHVIGDANQVPFIGIESKLAVMASQPEHWLPFQMPIPIQMQQHHQEHQNRPIIEICQDFNVAKPVYENQIMDIGYSENSLAMSMPIGATTMSFPLTCSDSKGVVTGAVTDDRVGVGRKHKYSDEMMEKTIERRQKRMAKNRESAARSRAKKQEHINKLHEDRDRLQKINMELKMKKKIDEWLFPNLTPRYQLRRISSAKF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03143 233 Gene3D - 163 213 - -
Trre9g03143 233 Coils Coil 188 208 - -
Trre9g03143 233 CDD bZIP_plant_BZIP46 165 210 - -
Trre9g03143 233 SMART brlzneu 161 220 IPR004827 GO:0003700|GO:0006355
Trre9g03143 233 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 163 208 IPR004827 GO:0003700|GO:0006355
Trre9g03143 233 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 7 229 IPR043452 GO:0003700|GO:0045893
Trre9g03143 233 Pfam bZIP transcription factor 165 208 IPR004827 GO:0003700|GO:0006355
Trre9g03143 233 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 168 183 IPR004827 GO:0003700|GO:0006355
Trre9g03143 233 SUPERFAMILY Leucine zipper domain 165 210 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03143 Trre-Chr9 39743490 39746492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03143 116 233 bZIP Transcription Factor Family AT3G56850 44.000 1.44e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre9g03143 bZIP_1 2.2e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03143 K14432 - rcu:8263004 155.606