Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03140 ATGTCTGCTCCTCAACCACGTCCTGTCCACCCTAAAATCTGGCAATCATGTGCCGGCCCCGCCGTCACCATTCCAAAACTTCACTCAAAAGTTTATTACTTCCCACTAGGTCACTTGGAACACGCCTGCCCTTTTCCTAACCCTAACACAATCTCCATGATTAATCAACACCGTCCTTTTATTCCCTGCATCATCTCCGCCGTTGATCTTCTCTCCGATCCTCACACCGATGAGGTATTCGCGAAACTGATCCTAACTCCCATGACTGAAAGCCATGTCCAAGAACCTCCTGTGGTTCCCAACCAAGAAAACGTTGAAGACAACGTTGTTTCTTTTATCAAGATGCTAACACAGTCTGATTCGAATAACGGCGGTGGATTCTCCGTACCTCGTGAATGCGCTGATTTAATTTTCCCTAAACTTGACTTCTCGGATCCGATGCCGTCTCAACAACTCTATGTCAACGATGTTCAAGGTAGAACCTGGAAGTACACTCATGTCTATCGTGGGAAACCTAAGAGACACTTGTTCACTACCGGCTGGACTCCGTTTGTTAACGGAAAAAAACTCGTTGCAGGAGACACTGTTGTTTTCTTGAAAAATTCGACCGGAGATGTATTTGTAGGTATCCGTCGCAACATGAAGTTTGCTGCCGCTGAAGCAGCGGCAGCACAAAAGAAGAGGAAGAAGGGGGAGGGTGAAGAGAAGGTTGAGGGTTTTTCAAGGAGCGGGAAAAGAGGGAATGTAACGGAGAAGGCGGTTATAGAGGCGGTGGAACGAGCGGAGAAAAATATGGCGTTTGAAGTTGTATATTATCCGACGCCAAATTGGACTAATTTTGTGGTGGAAGCTAAGGTTGTAGATGAGGCTATGAAGATTGGATGGGAATCTGGAATGAGAGTTAAGCTTCTTTTGAAGAAAGAGGAATCTTCAAAGAAGCCATTGTCTCAGCCTCAAGGGGCAATCTCAAATGTCTCTATTGTCCCTAAGTGGCGCATGCTTAAGGTTAATTGGGATGAATCTGAAATCTCGCAATATCCAAACTGTGTCAATCCTTGGCAAGTTGAACTTATTTCCCAAGCACCATCATTGTATCTACCATTCCTCCCAACAAAAAGGCCTAGACTTACAGAGACAAACCCCTTCATTCCTATGATAGATTTTCCTTATTCAACAATGGGATCCTTCAACCAAACATTGTTGAATTGTGATTCATTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCATTTATCTGCATCAAGTTCTTCCAACTTTTTGAATGGCTATGGTGTTTTTGTGAACAATATAATTGCAGGGTTTGGTACTATGCCAAAAGAACTAAACATTGGAAGTTCTACATCTGTTGATTCGTCGGCTCATAACAACTTCGGGACGAATTTTGTTGAAACACAAAATGATGATATAGAAAGAGTTAAGCCTAGTTCAATTAAGCTATTTGGTAAGATCATAGACATTGCTGAAAGTGATTTTGATGACTCTGGTATTAAGGGATCAGATTCAGAGGATGGTTCTAATGGATGCAGTGAAATTGAAGATATTGACAACACTTGCACAACAAATGATCAATAG 1593 0.4288 MSAPQPRPVHPKIWQSCAGPAVTIPKLHSKVYYFPLGHLEHACPFPNPNTISMINQHRPFIPCIISAVDLLSDPHTDEVFAKLILTPMTESHVQEPPVVPNQENVEDNVVSFIKMLTQSDSNNGGGFSVPRECADLIFPKLDFSDPMPSQQLYVNDVQGRTWKYTHVYRGKPKRHLFTTGWTPFVNGKKLVAGDTVVFLKNSTGDVFVGIRRNMKFAAAEAAAAQKKRKKGEGEEKVEGFSRSGKRGNVTEKAVIEAVERAEKNMAFEVVYYPTPNWTNFVVEAKVVDEAMKIGWESGMRVKLLLKKEESSKKPLSQPQGAISNVSIVPKWRMLKVNWDESEISQYPNCVNPWQVELISQAPSLYLPFLPTKRPRLTETNPFIPMIDFPYSTMGSFNQTLLNCDSFPAGMQGARHDHLSASSSSNFLNGYGVFVNNIIAGFGTMPKELNIGSSTSVDSSAHNNFGTNFVETQNDDIERVKPSSIKLFGKIIDIAESDFDDSGIKGSDSEDGSNGCSEIEDIDNTCTTNDQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03140 530 CDD B3_DNA 111 212 IPR003340 GO:0003677
Trre9g03140 530 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Trre9g03140 530 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Trre9g03140 530 SUPERFAMILY DNA-binding pseudobarrel domain 105 219 IPR015300 -
Trre9g03140 530 MobiDBLite consensus disorder prediction 507 530 - -
Trre9g03140 530 Gene3D - 295 363 - -
Trre9g03140 530 Gene3D - 109 214 IPR015300 -
Trre9g03140 530 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 492 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre9g03140 530 FunFam Auxin response factor 110 214 - -
Trre9g03140 530 Pfam Auxin response factor 257 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre9g03140 530 SMART B3_2 112 214 IPR003340 GO:0003677
Trre9g03140 530 MobiDBLite consensus disorder prediction 499 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03140 Trre-Chr9 39704003 39706475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03140 7 519 B3 DNA Binding Superfamily AT1G77850 39.247 2.16e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre9g03140 B3 4.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03140 - - tpra:123904492 845.884