Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03114 ATGGATAATAATCATATCCCTATGTTCACAAATATTACATACATCACCTTCTTCTTGAAAATAATAATCACTTTTTTTGCTCATCAATCCCACTCTCTATCCGTTGATTACAATTATTTTTGCAGAGACATCAAACACTCCTACAACTGCGGAAATCTCTCCAGCATTTTTTATCCATTTTGGGGACAAAATCGTCCTTTCCAATGTGGCGCCGGCAACCCATTTTACCTTAATTGCCACAAAAACATTACTACTACAATTCTATTATCTTCACAAAATTTCACAGTACTTGAAATCAACATAAAAGATCAAACAATGAAACTCAAAAGAACAGACCTTTCCTTAAATCTTTGTTCTCCTCAATTTGATGATACTTATTTGTTTCCACCTCTGTTTCAATATCTCTCAGATGTCAAAAATATCACCATATTCTACAATTGTAGTTCCTTTGAACAATCCCCTCAATTTATACCTAATATACAATCTCTATGTGGATCTAAGAATTATGCTTTCTGTGAAGTTAGTAGTCATGAAAAGTTCATGGAAGAAGCATGGAGATGCAACAGACATATCCAAGTGCCAATAGGAGCAGATTTTCCTGTAGACAAAGTAGATTATTATTATTATGAGCGTGATGTTCTTGAAAGTGGTTTGGATAAGGGGTTTGAGGTGAAGTATAGTGTGAATGAGGATTGTTTAGGGTGTTTGGGAGATGAAGTAGGAGTTTGCTTCAATGATTATGTAGAGTCCTCTTGCTATTATGATAATTGTCCAAATGGATCTTTTGCTTCTTCCGGACATTGTTCTCCTCTTCATAGAGGTGTTACAAGTGCAAGGGTGTTGGTGTTCTTGATGTGCATCTTAGTTTACTGTTTAAGATACAAAATATCAACAAAAACGGTAAACTTTAGGTTCTCAACAAAGAATGATCAAGACATTGAAACATTCCTAAAAAGTCATGGAGCTCTATCACAAAAAAGATATAAGTTTTCAGAGGTAAAGAAAATAACCAACTCATTCAAAACTAAATTGGGTCAAGGTGGTTTTGGTGTTGTATACAAAGGAAAGCTATTCAATGGTTGTCATGTGGCCGTAAAGATATTGAATGCATCAAAAGGAAATGGTGAAGAATTTATTAACGAAGTTGCTAGCATTAGTAGAACCTCCCATGTTAATGTTGTGACTCTTCTTGGATTTTGTTTCGAGGGACGCAAAAAAGCTCTTATATATGAATTAATGTCCAATGGTTCTCTTGATAACTTTATTTACAAGAAGGAACCACGAAACATTGGATCTCTAAGTTGGGAGAAGTTGTATGAAATTGCAAAAGGGATAGCTCGAGGTTTAGATTACTTGCATAGAGGATGCAATACTCGAATTTTACATTTTGATATAAAACCGCATAATATACTTTTGGATGAGAATTTCTGCCCAAAAATATCAGATTTTGGGCTTGCAAAACTTTGTCCCAAGAGAGAGAGCATTATTTCTATGTCAAATGCTAGAGGAACAATAGGGTATATTGCTCCGGAAGTGTGTAATAGACAATTTGGTGGAGTTTCGCAAAAGTCTGATGTTTATAGCTATGGAATGATGGTACTAGAAATGACCGGAGTGAGGAAAAAAATTGATAATCAGACAAGTGAATACTTCCCTGATTGGATATACAATAAGCTTGAAATGGACAATGATTTAAGAATTGATGGGGTGATGGCTACAAAAGATGATGAGATTGCAAGAGGAATGACCATTGTTGGTTTGTGGTGCATTCAAACGTTTCCAAATAACAGACCTACAATTAGTAGAGTGATTGAAATGTTAGAAGGTAACATCAAATCCCTCGAAATACCACCTAAACCTATGCTTTCTTCTCCTACTAGATCATTAACAATTGGATCTTCCACTTCTTGA 1911 0.3501 MDNNHIPMFTNITYITFFLKIIITFFAHQSHSLSVDYNYFCRDIKHSYNCGNLSSIFYPFWGQNRPFQCGAGNPFYLNCHKNITTTILLSSQNFTVLEINIKDQTMKLKRTDLSLNLCSPQFDDTYLFPPLFQYLSDVKNITIFYNCSSFEQSPQFIPNIQSLCGSKNYAFCEVSSHEKFMEEAWRCNRHIQVPIGADFPVDKVDYYYYERDVLESGLDKGFEVKYSVNEDCLGCLGDEVGVCFNDYVESSCYYDNCPNGSFASSGHCSPLHRGVTSARVLVFLMCILVYCLRYKISTKTVNFRFSTKNDQDIETFLKSHGALSQKRYKFSEVKKITNSFKTKLGQGGFGVVYKGKLFNGCHVAVKILNASKGNGEEFINEVASISRTSHVNVVTLLGFCFEGRKKALIYELMSNGSLDNFIYKKEPRNIGSLSWEKLYEIAKGIARGLDYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPKRESIISMSNARGTIGYIAPEVCNRQFGGVSQKSDVYSYGMMVLEMTGVRKKIDNQTSEYFPDWIYNKLEMDNDLRIDGVMATKDDEIARGMTIVGLWCIQTFPNNRPTISRVIEMLEGNIKSLEIPPKPMLSSPTRSLTIGSSTS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03114 636 SMART serkin_6 338 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03114 636 ProSiteProfiles Protein kinase domain profile. 338 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03114 636 Gene3D Transferase(Phosphotransferase) domain 1 413 616 - -
Trre9g03114 636 SUPERFAMILY Protein kinase-like (PK-like) 320 608 IPR011009 -
Trre9g03114 636 Gene3D Phosphorylase Kinase; domain 1 310 412 - -
Trre9g03114 636 Pfam Protein kinase domain 341 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03114 636 FunFam PR5-like receptor kinase 413 619 - -
Trre9g03114 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Trre9g03114 636 Pfam Wall-associated receptor kinase galacturonan-binding 49 109 IPR025287 GO:0030247
Trre9g03114 636 FunFam serine/threonine-protein kinase PBS1-like 306 412 - -
Trre9g03114 636 PANTHER RUST RESISTANCE KINASE LR10-RELATED 309 624 IPR045874 GO:0004672
Trre9g03114 636 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03114 Trre-Chr9 39543775 39549367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03114 21 636 Receptor kinase-like Gene Family AT5G38260 40.630 3.59e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre9g03114 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03114 - - tpra:123887353 743.036