Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03110 ATGGGTCGTGTTAAACTTGAGATTAAAAGAATAGAGAACACAACAAATCGACAAGTTACATTTTCAAAGCGAAGAAATGGCCTCATCAAAAAAGCTTATGAGTTATCTATTCTTTGTGATATTGATATTGCTCTTATAATGTTTTCTCCATCAAATCGTCTTAGTCATTTTTCGGGTAAAAAAAGGATAGAGGATGTTTTAACTCGTTACATTAATCTTCCTGACAATGAAAGAGATAATGCTGTCAGTTTTCCAGAGCTACCCTACCGGAGGGGTATTCAAAACAAAGAGTATTTGCTCAGGACGCTTCAGCAATTGAGAAGTGAAAATGACATAGCTCTTCATATGTCCAATCCGGGAGATATTAACTCTGAGATTGAGGACCTCCAACAAGAAGTTAGTAGATTACAACAACAACTTCAAATGGCAGAGGAGCAAATAAGGATATACGAACCCGAACCATTAAAGATGGCATCTATGCAAGAGCTTGAAACCAGTGAAAAAAACGTTGTAGAAACTTTGGCACGTGTCATGCAGCGAAAGGAACTTTTATTGAACAACCAGCTATCTTCGTATGATCCATCTGGTATACAGGGAATGCCCACATCATTCGAGAATGTAGGTTGGTTACAGGATGGTAGTCAAAATCATCCCCATATGTTTGATGCATCCACTCCTTTGGATCCTCTCAGGGATTTGACCTCTACTGTATACGGTTCATTTTCACAAGGGACAAGTTCAAATGTTGACCAAAGAGCAATAGGAGAGTGCCACGTGGCAAACCCAAATGATGGAAACCTTCAAGCATGGCCTCAAGGATACACATTATATCCTCATCATCAACAAGAACAACAACATCAACATCCACATCATCATATTCAACATGACATGGTTGGAACTGATCATCATCATCATCACAATATTCAAGATATGATGCCACATGGACAACAAATGAACATGCCAATTACTGCCTCACAAGTTGAACCACCCAAAAATGAATCAACAGATCAATTTGATCAATGTAAACAACCTAATCATCAGGTTCATGCTCAATGA 1056 0.3845 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFSGKKRIEDVLTRYINLPDNERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALHMSNPGDINSEIEDLQQEVSRLQQQLQMAEEQIRIYEPEPLKMASMQELETSEKNVVETLARVMQRKELLLNNQLSSYDPSGIQGMPTSFENVGWLQDGSQNHPHMFDASTPLDPLRDLTSTVYGSFSQGTSSNVDQRAIGECHVANPNDGNLQAWPQGYTLYPHHQQEQQHQHPHHHIQHDMVGTDHHHHHNIQDMMPHGQQMNMPITASQVEPPKNESTDQFDQCKQPNHQVHAQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03110 351 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre9g03110 351 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre9g03110 351 Coils Coil 126 153 - -
Trre9g03110 351 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Trre9g03110 351 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 279 - -
Trre9g03110 351 FunFam MADS-box transcription factor 41 13 92 - -
Trre9g03110 351 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre9g03110 351 MobiDBLite consensus disorder prediction 326 351 - -
Trre9g03110 351 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Trre9g03110 351 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre9g03110 351 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre9g03110 351 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre9g03110 351 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre9g03110 351 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03110 Trre-Chr9 39499357 39504506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03110 1 324 Type I MADS-box Gene Family AT1G22130 55.120 2.04e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre9g03110 SRF-TF 2.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03110 - - gmx:100305913 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03110 9 39499357 39504506 Trre9g03110 9 39499357 39504506 ECH