Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03108 ATGTGTAAGCGAAAGGCAACTGTGCTAGTAGAATCTGATACTGAAATAAAAAATTCAACGAGTCCCAACATTGGTGACGTCGGTGAAGATGAATCAACAAATTCATCGACAATTTTTTCTCTGTTTCTCCTATTTGGATTCATTATTAATCCTCGTAAGGGAATCCAACCTGCTTACTCATGCAATTTTTGTAGCCGAAAATTCCTTACACCGCAAGCATTAGGCGGGCACCAAAATTCCCACAAATTGGAGAGAAGAGTCAAAAGAAGGACCGAAGCTAGTAACCAAGGGGTGGTAATAAGCCTAAACATTGAGACTCCATGCCATGGGGGGTATGGATATCAATATAATGAATCTGACAATATGATTCAGCTTCCAATGTCATCAAATTTTGATGCAAAAAATTTGCTTGTTCCATTGCAGGATATTCCACAGATAGATCAAGTGATCAATGATGCTAATCAAAGCATTGTTAGTCAACAAGCTACTATGACTGAGATTGACTATGGTTCAATTTCAAATGGGGGTGATGATGTTGATCATGAAGACAAAGACACTCAAGAGGAGGAAGCAATCAAAGATGATTTGACCCTTAAGCTTTGA 603 0.3847 MCKRKATVLVESDTEIKNSTSPNIGDVGEDESTNSSTIFSLFLLFGFIINPRKGIQPAYSCNFCSRKFLTPQALGGHQNSHKLERRVKRRTEASNQGVVISLNIETPCHGGYGYQYNESDNMIQLPMSSNFDAKNLLVPLQDIPQIDQVINDANQSIVSQQATMTEIDYGSISNGGDDVDHEDKDTQEEEAIKDDLTLKL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03108 200 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Trre9g03108 200 MobiDBLite consensus disorder prediction 168 200 - -
Trre9g03108 200 MobiDBLite consensus disorder prediction 175 200 - -
Trre9g03108 200 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 59 154 IPR044246 GO:0009788
Trre9g03108 200 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Trre9g03108 200 Gene3D Classic Zinc Finger 47 105 - -
Trre9g03108 200 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03108 Trre-Chr9 39478358 39478960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03108 57 126 C2H2 Transcription Factor Family AT5G05120 42.254 5.30e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03108 - - mtr:120577076 196.052