LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g03105	ATGAGAGAACAAAGAGTCCTTCATATTGAAGATACTACTCAAATTGAGAGATCTAAGTGGGTTTTGGATTCTCCTAATCCACCACCATTATGGAAAAAAATATTTACTTCATTGAAAGAGACCCTTTTGCCTCATGGAAACAAATTGTGTTTATCATCCAAGAACAAAACTTTTTATGGACATGCTTACTCTTTCTTGCAGAATTTGTTTCCAATCCTTGTTTGGTTTAAAGATTATACTTTATCCAAATTTAAAGATGATTTGTTAGCTGGTTTAACTCTTGCCAGCCTTTGCATACCTCAGAGTATAGGATATGCAAGTTTGGCAAAAGTTGATCCTCAATATGGCCTGTATACCAGTATTGTTCCTCCTCTTATCTATGCTGTGATGGGGAGCTCAAGAGACATTGCAATTGGACCTGTAGCTGTAGTGTCTATGCTGTTATCTTCATTGGTTACAAAAGTCATAGATCCTGTTGCTAATCCTCATGCCTATAGAGATTTTGTCTTTACTGTCACCTTCTTTACTGGAATTTTTCAAGCTGCATTCGGTATTTTCAGGTTGGGTTTTCTTGTGGATTTTCTTTCACATGCTGCACTAGTTGGATTTATGGCTGGAGCAGCTCTTATTATTGGTCTTCAGCAGCTCAAGGGTCTTTTGGGGATTACTCACTTCACCACCAAAACAGATGCAATATCAGTACTGGTGTCTGTTTATAAGTCATTACATGAACAAATTACTTCTGAAGAAGAAAAATGGAGCCCTCTGAATTTTGTCCTTGGCTGTTCTTTCTTGATTTTCCTTCTAGTTACCCGTTTTATAGCAAGAAAAAAGAAGAAACTTTTCTGGTTGCCTGCTATTGCTCCTCTTCTATCAGTTATACTATCAACTTTAATCGTGTATTTATCGAAAGCTGATAAACAAGGAGTTAATATAATAAAGCATGTCAAAGGAGGCTTGAATCAGAGTTCAGTTCATCAGTTACAATTCCATGGTCAAAATGTCGGTCAAGCGGCCAAAATCGGATTAGTTTGTGCAGTTATCGCCCTCACTGAAGCAATGGCTGTTGGTCGATCTTTCGCTTCCATTAAGGGATACCAACTTGATGGGAATAAAGAAATGTTCTCAATGGGAATCATGAACATTGCAGGATCATTATCTTCATGCTATGTCGCAACTGGATCGTTTTCGAGGACAGCGGTTAATTTCAGTGCAGGATGTCAAACAGCAGTATCAAATATTGTGATGGCATTAACTGTGATTTTGTTCCTTCAATTATTTGCAAGGCTCTTATACTACACACCTATGGCTATCCTTGCTGCTATAATCCTCTCTGCACTTCCTGGATTAATCGATATTAACGAGGCTCGCTATATTTGGAAAGTCGACAAATTAGACTTTCTTGCCTGTATTGGCGCTTTTGTTGGCGTCTTGTTTGCATCCGTAGAGATTGGTCTTCTTGTTGCAGTGACAATCTCATTTGCGAAGATACTGATACAATCAATTCGACCTGGAGTAGAAATTCTCGGAAGAGTTCCAAGAACAGAAGCCTTCTGTGATGTTACTCAATATCCGATGGCCACAAGCACACCAGGCATCATAGTGATCCGCATAAGTTCCGGCTCACTCTGCTTCGCAAATGCCAATTTTGTCAAAGAAAGAATACTGAAGTGGGTCGTGGAAGAAGATGACATTCAAGAAACTTCCAAGGGAAATGTCCGAGCCATAATTATGGACATGACTAACTTGATGAATGTTGATACTTCTGGAATTCTAGCACTAGAGGAATTACATAAGAGGCTGCTTTCACGCGGCGTAGAATTAGCTATGGTCAACCCAAGATGGCTAGTAATTCATAAGCTCAAGCTTGCACACTTTGTGGACAAAATAGGGAAACAATGGGTTTTTCTGACTGTTGGAGAGGCCGTAGACGCGTGTCTCGCTTCTAAAATCGCTACCGCTTGA	1965	0.3954	MREQRVLHIEDTTQIERSKWVLDSPNPPPLWKKIFTSLKETLLPHGNKLCLSSKNKTFYGHAYSFLQNLFPILVWFKDYTLSKFKDDLLAGLTLASLCIPQSIGYASLAKVDPQYGLYTSIVPPLIYAVMGSSRDIAIGPVAVVSMLLSSLVTKVIDPVANPHAYRDFVFTVTFFTGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAALIIGLQQLKGLLGITHFTTKTDAISVLVSVYKSLHEQITSEEEKWSPLNFVLGCSFLIFLLVTRFIARKKKKLFWLPAIAPLLSVILSTLIVYLSKADKQGVNIIKHVKGGLNQSSVHQLQFHGQNVGQAAKIGLVCAVIALTEAMAVGRSFASIKGYQLDGNKEMFSMGIMNIAGSLSSCYVATGSFSRTAVNFSAGCQTAVSNIVMALTVILFLQLFARLLYYTPMAILAAIILSALPGLIDINEARYIWKVDKLDFLACIGAFVGVLFASVEIGLLVAVTISFAKILIQSIRPGVEILGRVPRTEAFCDVTQYPMATSTPGIIVIRISSGSLCFANANFVKERILKWVVEEDDIQETSKGNVRAIIMDMTNLMNVDTSGILALEELHKRLLSRGVELAMVNPRWLVIHKLKLAHFVDKIGKQWVFLTVGEAVDACLASKIATA	654

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre9g03105	654	PANTHER	SULFATE TRANSPORTER	55	647	IPR001902	GO:0016020\|GO:0055085
Trre9g03105	654	FunFam	Sulfate transporter 31	503	649	-	-
Trre9g03105	654	Gene3D	STAS domain	503	649	IPR036513	-
Trre9g03105	654	SUPERFAMILY	SpoIIaa-like	529	646	IPR036513	-
Trre9g03105	654	ProSiteProfiles	STAS domain profile.	540	646	IPR002645	-
Trre9g03105	654	Pfam	Sulfate permease family	84	471	IPR011547	GO:0016020
Trre9g03105	654	Pfam	STAS domain	524	642	IPR002645	-
Trre9g03105	654	NCBIfam	sulfate permease	71	642	IPR001902	GO:0016020\|GO:0055085
Trre9g03105	654	CDD	STAS_SulP_like_sulfate_transporter	524	639	-	-
Trre9g03105	654	ProSitePatterns	SLC26A transporters signature.	113	134	IPR018045	GO:0008271\|GO:0008272

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g03105	Trre-Chr9	39451541	39455949	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g03105	14	651	Inorganic Solute Cotransporters	AT5G10180	62.402	0.0	826

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g03105	K17469		-	gmx:100776591	1073.92

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre9g03105	9	39451541	39455949	Trre5g02287	5	17310221	17315510	PCT

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