Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03078 ATGGATTTTTTCAACAATTCACAAGATCCATTCAATGGTGAGTTAATGGAAGTTCTTGAACCTTTTATGAAAAGTTCTTCCATTACTACTCCATCTTCATCTTCATCCTCTTTACCTTCAACTTCATCACCATTTTACTCTTCTAACCCCCCTTCCTATTTCCAACCCTCCTCTCTTTCACCTTCTTTTCCTACTACACAGCCCAATTTCTACACAGAAAATGGTTATTGTTCATCCATGATGATGACCTACCAATTTCCCTCCTCAGGTAGTATTAATTCATCAAATAGCCAAAATAATTTCTTTGGCTTTGAACAACCACAACCAAATTCTGTTCTTGGGCTAAACAACTTAACCCCATCTCAAATTAACCAGATCCAAGCCCAGATCCAATTTCAAGCCCAACAACAAAACCACAACAACAACAGTTTATCCTTTCTTGGGCCTAAGCCCATCTCAATGAAACAGCCTGGTGTACCTCCAAAGCCCACTAAGCTTTATAGAGGTGTTAGGCAAAGACATTGGGGAAAATGGGTGGCTGAGATTAGACTACCTAAAAATAGAACAAGGCTTTGGCTTGGTACTTTTGATACCGCTGAAGAAGCTGCTTTAGCTTATGATAGAGCTGCTTATAGATTAAGAGGTGATGTTAACAAACAAGGGAAGATTGAGAAAAAAAGTGTCAAAGGTTCTAAGAAGGGCTTGAAAAAAGAACAACCTTTGGATGATGTTGTTGTTGTTGTTGATGACAATAACAACAATAACAAGGTTGTTGTTGTTGAAGGCTCTTTGTCTTCTCCTGAAGGTTCTGATGATTCTTCTCCACTTTCTGATCTTACTTTTGGTGATTATGCTGAGCCACAATGGGAAAATGGTTGTGAACAATTGAATCTGCAGAAGTTTCCTTCTTATGAGATTGATTGGGATTCTCTTGGAAAGATGATGGATTAA 951 0.3828 MDFFNNSQDPFNGELMEVLEPFMKSSSITTPSSSSSSLPSTSSPFYSSNPPSYFQPSSLSPSFPTTQPNFYTENGYCSSMMMTYQFPSSGSINSSNSQNNFFGFEQPQPNSVLGLNNLTPSQINQIQAQIQFQAQQQNHNNNSLSFLGPKPISMKQPGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDVNKQGKIEKKSVKGSKKGLKKEQPLDDVVVVVDDNNNNNKVVVVEGSLSSPEGSDDSSPLSDLTFGDYAEPQWENGCEQLNLQKFPSYEIDWDSLGKMMD 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03078 316 Gene3D AP2/ERF domain 166 220 IPR036955 GO:0003700|GO:0006355
Trre9g03078 316 ProSiteProfiles AP2/ERF domain profile. 166 224 IPR001471 GO:0003700|GO:0006355
Trre9g03078 316 FunFam Ethylene-responsive transcription factor 2 165 220 - -
Trre9g03078 316 Pfam AP2 domain 167 215 IPR001471 GO:0003700|GO:0006355
Trre9g03078 316 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Trre9g03078 316 PRINTS Ethylene responsive element binding protein signature 189 205 IPR001471 GO:0003700|GO:0006355
Trre9g03078 316 CDD AP2 165 215 IPR001471 GO:0003700|GO:0006355
Trre9g03078 316 MobiDBLite consensus disorder prediction 26 47 - -
Trre9g03078 316 SMART rav1_2 166 232 IPR001471 GO:0003700|GO:0006355
Trre9g03078 316 SUPERFAMILY DNA-binding domain 166 217 IPR016177 GO:0003677
Trre9g03078 316 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03078 Trre-Chr9 39189496 39190563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03078 102 311 AP2-EREBP Transcription Factor Family AT1G78080 46.617 9.97e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g03078 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03078 K09286 - gmx:732559 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03078 9 39189496 39190563 Trre5g02311 5 17596255 17597331 PCT