Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03075 ATGACAAACCAAAATGTATTGGGAAAGTCAAGTTTGAATGAGAGACTTATGGAGTTAGCAATATCAATTTCAAACTCTAATGTATTACCAACAACATCTGTACCAGAATTAATGGCTTGGTTTGATAGGCTTTTGGCTCACCCCAAAAACAATCTCGTTAAACCTTTGGAAGATCATAACGGCAAAGTTAACTCATGGGTTGATTCCATGAGAGCTTCTTCTCCTACTCGAACCAAACACGGTTCCGAGAATCGGGACCAAACTCATTGGACCCTTTTCCATCCTTCGGCGTTGAACATGTTTAATCAAATAATGTACAATTCAAATGGGAAACAAATTGTAGTGTTTCTTGATTATGATGGAACTCTATCTCCAATTGTTACAGATCCAGATAGAGCTTTCATGACTAAAAAGATGAGAGCAACTTTAAAGGACATAGCAAGGCATTTCCCCACAGCCATCGTTAGTGGAAGGTGCTTAGACAAGCTATTTAGCTTTGTAAGGTTAGCAGAATTATACTATGCGGGAAGCCATGGGATGGATATTAAGGGACCAACAAATAGGAGAAGCACTAAAAAAGGTAGTAATGATGGGGTACTTTTGCAGCCTGCTAATGAATTCTTGCCCATGATAAATGAGGTTTATAAGATTTTGGTGGAAAAAACAAAGTGTGTTCCAGGGGCTATGGTGGAAAATAACAAGTTTTGTATATCGGTGCATTTTCGCTGCGTTGACGAAAAGAGTTGGGCAGCATTGGCTGAACAAGTAAGCTTAGTGCTGAATGAGTACCCAAAGCTGAAGCTAACACAAGGGAGAAAAGTGTTAGAGATTCGACCAACCATTAAATGGGATAAGGGAAGGGCTCTTGAATTTTTGTTAGAGTCACTTGGTTTTGGAAATTCTAACAATGTATTTCCAATTTATATTGGTGATGATCGAACTGATGAAGATGCTTTCAAGGTTTTAAGCAATAGAGGCCAAGGAATTGGAATTCTTGTTTCTAAAATTCCAAAAGAAACCAAAGCTTCATACACTTTGCAAGATCCATCTGAGGTTGGAGAATTTTTGCGGCATTTGGTGGATTGGAAAAGAACAAGCTCTCATTTTCACTAG 1113 0.3854 MTNQNVLGKSSLNERLMELAISISNSNVLPTTSVPELMAWFDRLLAHPKNNLVKPLEDHNGKVNSWVDSMRASSPTRTKHGSENRDQTHWTLFHPSALNMFNQIMYNSNGKQIVVFLDYDGTLSPIVTDPDRAFMTKKMRATLKDIARHFPTAIVSGRCLDKLFSFVRLAELYYAGSHGMDIKGPTNRRSTKKGSNDGVLLQPANEFLPMINEVYKILVEKTKCVPGAMVENNKFCISVHFRCVDEKSWAALAEQVSLVLNEYPKLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGFGNSNNVFPIYIGDDRTDEDAFKVLSNRGQGIGILVSKIPKETKASYTLQDPSEVGEFLRHLVDWKRTSSHFH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03075 370 Gene3D - 195 280 - -
Trre9g03075 370 FunFam Trehalose 6-phosphate phosphatase 210 369 - -
Trre9g03075 370 Pfam Trehalose-phosphatase 116 350 IPR003337 GO:0003824|GO:0005992
Trre9g03075 370 SUPERFAMILY HAD-like 114 363 IPR036412 -
Trre9g03075 370 Gene3D - 115 346 IPR023214 -
Trre9g03075 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 51 368 IPR044651 GO:0004805|GO:0005992
Trre9g03075 370 FunFam Trehalose 6-phosphate phosphatase 204 280 - -
Trre9g03075 370 CDD HAD_TPP 114 354 - -
Trre9g03075 370 NCBIfam HAD-IIB family hydrolase 115 323 IPR006379 -
Trre9g03075 370 NCBIfam trehalose-phosphatase 111 360 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03075 Trre-Chr9 39140626 39142968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03075 109 370 Trehalose Biosynthesis Gene Families AT1G23870 24.828 2.50e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03075 K01087 - gmx:100792915 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03075 9 39140626 39142968 Trre5g02827 5 22535585 22540135 PCT