LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g03075	ATGACAAACCAAAATGTATTGGGAAAGTCAAGTTTGAATGAGAGACTTATGGAGTTAGCAATATCAATTTCAAACTCTAATGTATTACCAACAACATCTGTACCAGAATTAATGGCTTGGTTTGATAGGCTTTTGGCTCACCCCAAAAACAATCTCGTTAAACCTTTGGAAGATCATAACGGCAAAGTTAACTCATGGGTTGATTCCATGAGAGCTTCTTCTCCTACTCGAACCAAACACGGTTCCGAGAATCGGGACCAAACTCATTGGACCCTTTTCCATCCTTCGGCGTTGAACATGTTTAATCAAATAATGTACAATTCAAATGGGAAACAAATTGTAGTGTTTCTTGATTATGATGGAACTCTATCTCCAATTGTTACAGATCCAGATAGAGCTTTCATGACTAAAAAGATGAGAGCAACTTTAAAGGACATAGCAAGGCATTTCCCCACAGCCATCGTTAGTGGAAGGTGCTTAGACAAGCTATTTAGCTTTGTAAGGTTAGCAGAATTATACTATGCGGGAAGCCATGGGATGGATATTAAGGGACCAACAAATAGGAGAAGCACTAAAAAAGGTAGTAATGATGGGGTACTTTTGCAGCCTGCTAATGAATTCTTGCCCATGATAAATGAGGTTTATAAGATTTTGGTGGAAAAAACAAAGTGTGTTCCAGGGGCTATGGTGGAAAATAACAAGTTTTGTATATCGGTGCATTTTCGCTGCGTTGACGAAAAGAGTTGGGCAGCATTGGCTGAACAAGTAAGCTTAGTGCTGAATGAGTACCCAAAGCTGAAGCTAACACAAGGGAGAAAAGTGTTAGAGATTCGACCAACCATTAAATGGGATAAGGGAAGGGCTCTTGAATTTTTGTTAGAGTCACTTGGTTTTGGAAATTCTAACAATGTATTTCCAATTTATATTGGTGATGATCGAACTGATGAAGATGCTTTCAAGGTTTTAAGCAATAGAGGCCAAGGAATTGGAATTCTTGTTTCTAAAATTCCAAAAGAAACCAAAGCTTCATACACTTTGCAAGATCCATCTGAGGTTGGAGAATTTTTGCGGCATTTGGTGGATTGGAAAAGAACAAGCTCTCATTTTCACTAG	1113	0.3854	MTNQNVLGKSSLNERLMELAISISNSNVLPTTSVPELMAWFDRLLAHPKNNLVKPLEDHNGKVNSWVDSMRASSPTRTKHGSENRDQTHWTLFHPSALNMFNQIMYNSNGKQIVVFLDYDGTLSPIVTDPDRAFMTKKMRATLKDIARHFPTAIVSGRCLDKLFSFVRLAELYYAGSHGMDIKGPTNRRSTKKGSNDGVLLQPANEFLPMINEVYKILVEKTKCVPGAMVENNKFCISVHFRCVDEKSWAALAEQVSLVLNEYPKLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGFGNSNNVFPIYIGDDRTDEDAFKVLSNRGQGIGILVSKIPKETKASYTLQDPSEVGEFLRHLVDWKRTSSHFH	370

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre9g03075	370	Gene3D	-	195	280	-	-
Trre9g03075	370	FunFam	Trehalose 6-phosphate phosphatase	210	369	-	-
Trre9g03075	370	Pfam	Trehalose-phosphatase	116	350	IPR003337	GO:0003824\|GO:0005992
Trre9g03075	370	SUPERFAMILY	HAD-like	114	363	IPR036412	-
Trre9g03075	370	Gene3D	-	115	346	IPR023214	-
Trre9g03075	370	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	51	368	IPR044651	GO:0004805\|GO:0005992
Trre9g03075	370	FunFam	Trehalose 6-phosphate phosphatase	204	280	-	-
Trre9g03075	370	CDD	HAD_TPP	114	354	-	-
Trre9g03075	370	NCBIfam	HAD-IIB family hydrolase	115	323	IPR006379	-
Trre9g03075	370	NCBIfam	trehalose-phosphatase	111	360	IPR003337	GO:0003824\|GO:0005992

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g03075	Trre-Chr9	39140626	39142968	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g03075	109	370	Trehalose Biosynthesis Gene Families	AT1G23870	24.828	2.50e-07	50.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g03075	K01087		-	gmx:100792915	550.436

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre9g03075	9	39140626	39142968	Trre5g02827	5	22535585	22540135	PCT

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