Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre9g03051 | ATGATGATGAAGTACTTCACTCTATTATACACTCGTCTAAAATGTGTATTGGATATCATTACATATTATCCCTTCTATAAACTCCATGATTCTCATTTTCCAATAATTGAAGAAGTATACAATGTATGCAATTATGAACCCAGTTTTGACTCAGAGGAAGATGTAGAATGTTCAGTGTGTCTATGCAAAATAGAAGAAGGAGATGAGATTAGAGTATTGAGATGTAACCATATCTATCACACAGAATGTTTGGATAAATGGATTGCTTTCAAGAACAACACTTGCCCTCTTTGCAGAGATTCATTGGTACCTAAAAGGGATGTAACTGAGCTTGGAGCCGAAGTTCTTTCATTTAATTTTTGTGCTATTCGTAGTGATCGAGCTCGTGATGATTGGTTTCTAATTTGA | 408 | 0.3456 | MMMKYFTLLYTRLKCVLDIITYYPFYKLHDSHFPIIEEVYNVCNYEPSFDSEEDVECSVCLCKIEEGDEIRVLRCNHIYHTECLDKWIAFKNNTCPLCRDSLVPKRDVTELGAEVLSFNFCAIRSDRARDDWFLI | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre9g03051 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 99 | IPR001841 | - | |
| Trre9g03051 | 135 | SMART | ring_2 | 57 | 98 | IPR001841 | - | |
| Trre9g03051 | 135 | PANTHER | - | 2 | 110 | - | - | |
| Trre9g03051 | 135 | SUPERFAMILY | RING/U-box | 47 | 109 | - | - | |
| Trre9g03051 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 106 | IPR013083 | - | |
| Trre9g03051 | 135 | Pfam | Ring finger domain | 56 | 99 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre9g03051 | Trre-Chr9 | 38906225 | 38906632 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre9g03051 | 52 | 115 | C3H Transcription Factor Family | AT2G04240 | 46.875 | 4.36e-14 | 63.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre9g03051 | K16282 | - | jre:108981879 | 128.642 |