Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03050 ATGATGATGAATTATGAATCCAGCTTTGACTCAGAGGAAGATGTAGAATGTTCAGTGTGTCTATGCAAAATAGAAGAAGGAGATGAGATTAGAGTATTGAGATGTAACCATATGTATCACACAGAATGTTTGGATAAATGGATTGGTTTCAACAACAACACTTGCCCTCTTTGCAGAGAATCATTGGGAACAAGAAGGGTCGTAGCTGAGCTTGGAGCTGAAGTTCTTTCATTTAATTTTTGTAATATCCGAAGTGATCGAGATCATGATGATTGGTGGCTACGTTGA 288 0.3785 MMMNYESSFDSEEDVECSVCLCKIEEGDEIRVLRCNHMYHTECLDKWIGFNNNTCPLCRESLGTRRVVAELGAEVLSFNFCNIRSDRDHDDWWLR 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03050 95 PANTHER - 3 70 - -
Trre9g03050 95 SUPERFAMILY RING/U-box 7 65 - -
Trre9g03050 95 SMART ring_2 17 58 IPR001841 -
Trre9g03050 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
Trre9g03050 95 ProSiteProfiles Zinc finger RING-type profile. 17 59 IPR001841 -
Trre9g03050 95 Pfam Ring finger domain 16 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03050 Trre-Chr9 38896350 38896757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03050 12 62 C3H Transcription Factor Family AT2G04240 52.941 8.48e-14 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03050 K16282 - mof:131154354 128.257