Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03049 ATGATGATGAAGTACTTCACTCTATTATACACTCATCTAAAATGGGTATTGGATATCATTACATATTATCCCTTCTATAAACTCCATGATTCTCATTTTCCAATAATTGAAGAAGTATACAATGTATGCAATTATGAACCCAGTTTTGACTCAGAGGAAGATGTAGAATGTTCAGTGTGTCTATGCAAAATAGAAGAAGGAGATGAGATTAGAGTATTGAGATGTAACCATATCTATCACAGAGAATGTGTGGATAAATGGATTGCTTTCAAGAACAACACTTGCCCTCTTTGCAGAGATTCATTGGGACCTAAAAGAGCTGTAACTGAGCTTGGAGCTGAAGTTCTTTCATTTAATTTTTGTGCTATTCGTAGTGATCGAACTCGTGATGATTGGTTTCTAATTTGA 408 0.3456 MMMKYFTLLYTHLKWVLDIITYYPFYKLHDSHFPIIEEVYNVCNYEPSFDSEEDVECSVCLCKIEEGDEIRVLRCNHIYHRECVDKWIAFKNNTCPLCRDSLGPKRAVTELGAEVLSFNFCAIRSDRTRDDWFLI 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03049 135 PANTHER - 2 110 - -
Trre9g03049 135 SMART ring_2 57 98 IPR001841 -
Trre9g03049 135 CDD RING-H2_PA-TM-RING 56 99 - -
Trre9g03049 135 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
Trre9g03049 135 Pfam Ring finger domain 56 99 IPR001841 -
Trre9g03049 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 106 IPR013083 -
Trre9g03049 135 SUPERFAMILY RING/U-box 47 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03049 Trre-Chr9 38888373 38888780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03049 50 119 C3H Transcription Factor Family AT1G53820 43.662 7.87e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03049 K16282 - mof:131154354 129.413