Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03042 ATGACTGATTCACACTCAATTAATGTTGAATCATCACCTAAGCTTGAATTATATGCTGCTAAACAAACAAAAAGTATAACTTCTGAAGCTGAACACTCTCCATCTAGCATCCAAAAGGCTATTGCTGAATTTGTGGGAACATACATTCTTATATTTGCTGGTTGTGGAGCTGCTCTTGTCAATGAGAGGTTACAAATCACGGTAGTTGGTATAGCAATTGTTTCGGGATTAGCTCTAACTGTCGCTATATATTCGGTTGGTCACGTCTCTGGTGGTCATTTCAATCCTGCTGTCACAATTGCCTTAGCCGTGGTCCGAAAAATTCAATTGAAACTTGTGCCTGTTTATTTGGTTTGTCAATTGATGGGTGCTACAATGGCCACACTCACCCTCAAAGTGTTGTATCATGAAAAGGTTTCAATTGGTGTAACATTGACTCAATACTCAAATTCAACTTCTAATCTTGAAGCATTAGTGTGGGAATCCATAATCACTTTCATACTCATGCTAACTATTTGTGGTGTTGCCACTGATCACAGAGGGAGCAAAGAACTTGCTGGAGTTGCAATAGGCCTTTCAGTTCTGATTAATATAATAATCGCCGGGCCGATAACAGGAGCATCGATGAATCCAGGAAGGAGTTTGGGCCCTGCCATAGTATCAGGCAATTACAAAAACATTTGGGTTTATATCATAGGCCCAATTATTGGAGCAGTTTTTGCAAGTGTGCTTTATACTTTCCTAAGAGTAACAAAACCAGTTCAACCAGAACAATCTCATGTGTGA 786 0.3957 MTDSHSINVESSPKLELYAAKQTKSITSEAEHSPSSIQKAIAEFVGTYILIFAGCGAALVNERLQITVVGIAIVSGLALTVAIYSVGHVSGGHFNPAVTIALAVVRKIQLKLVPVYLVCQLMGATMATLTLKVLYHEKVSIGVTLTQYSNSTSNLEALVWESIITFILMLTICGVATDHRGSKELAGVAIGLSVLINIIIAGPITGASMNPGRSLGPAIVSGNYKNIWVYIIGPIIGAVFASVLYTFLRVTKPVQPEQSHV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03042 261 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Trre9g03042 261 NCBIfam MIP family channel protein 42 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre9g03042 261 SUPERFAMILY Aquaporin-like 33 253 IPR023271 -
Trre9g03042 261 Gene3D Glycerol uptake facilitator protein. 3 260 IPR023271 -
Trre9g03042 261 PANTHER AQUAPORIN NIP2-1 21 252 IPR034294 -
Trre9g03042 261 CDD MIP 38 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre9g03042 261 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre9g03042 261 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre9g03042 261 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre9g03042 261 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre9g03042 261 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre9g03042 261 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre9g03042 261 Pfam Major intrinsic protein 33 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03042 Trre-Chr9 38782580 38784279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03042 4 255 Major Intrinsic Protein MIP AT5G37820 46.008 2.92e-71 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03042 K09874 - gmx:100798380 385.185