Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03036 ATGAAAAACATTAATCTTTTTAGACTATTTAGTTTCAGTCTTGGAGAAGCATGGCTCACTTTGTTACTTGTTATTACTCTCATACAAAATTTACTGCTGGTGACCGGTCAAAGTCAAACACTTGGACTGGAAGATCCAACGGGGAACAACAACTCATTACCCACCATAGTGGTGATTATAGCCTTTACATTCCTCTTCTCCATTTTCCTTTCTCTATGCCAAGCTAGATGTAGCGAACGTCAATCAGGGGTTAGTTTCGACGTTAGTTTACCAATCGGCGCCGGAAGCAATCTCCAGGCACCAAGTAACGGTCTCAACCAAGATGTTATTGACACATTCCCAACTTTTTGTTACTCCAATGTGAAGGGACTTAAGATTGGAAAAAGCACTTTGGCTTGTGCTATTTGCTTGAATGAATTTCAAGATGATGAAACATTGCGTTTAATCCCTAAATGTAGCCATGTGTACCACCATGGTTGCATTGATATTTGGCTTGTTTCTCATAATACTTGCCCTGTTTGTCGTGCTAGCCTTGATCCAAGACTTGAAGACACAATTGTGCCTCCAACTATAACCATTCAGATACCAGAAGGAGAATTACATGATGAAGAAGTAAATCTTGATATTCATGAGGAACAAAAGAGAGACAACATTGATGTGGAATATTCAACAAAGGTAAATTCACTTCGTAGGTCTCACACATATTGTGCATCAACACAATCAAGATCATCAGGATTCATATCTACTATCTTGTTATCACGGTCGAATTCAACTGGTGTGTTGGTGAAACCAGGTGAGGATTGTGAGAGGTTTACATTGAGGTTACCTGATGAAGTACGAAATCAAATGATGATGAATACAAAGATGCATAAGCGTGCAAAAAGTTGTGTGAGTTTTAAGAAAATGAGCAGTGGCATTTGCGGTTATAGGTCAAAAAGTGTTGGATGTGGAAGTGGGTGGCATCACGGGCATTACGAAAGGTTTGTAAGTGAGGAGGAAGAGAACTTAGGGTTCGTTAGAAATAGTTGGCATAATAAATGTTTTACAAAATCTCCGGTGAAGTGTTTGGAAGTTAATATGGACAATATTGGAGGTGAGCGGTCATCTAATCTTTCGATTCCTACGTAG 1128 0.3927 MKNINLFRLFSFSLGEAWLTLLLVITLIQNLLLVTGQSQTLGLEDPTGNNNSLPTIVVIIAFTFLFSIFLSLCQARCSERQSGVSFDVSLPIGAGSNLQAPSNGLNQDVIDTFPTFCYSNVKGLKIGKSTLACAICLNEFQDDETLRLIPKCSHVYHHGCIDIWLVSHNTCPVCRASLDPRLEDTIVPPTITIQIPEGELHDEEVNLDIHEEQKRDNIDVEYSTKVNSLRRSHTYCASTQSRSSGFISTILLSRSNSTGVLVKPGEDCERFTLRLPDEVRNQMMMNTKMHKRAKSCVSFKKMSSGICGYRSKSVGCGSGWHHGHYERFVSEEEENLGFVRNSWHNKCFTKSPVKCLEVNMDNIGGERSSNLSIPT 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03036 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 181 IPR013083 -
Trre9g03036 375 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Trre9g03036 375 SUPERFAMILY RING/U-box 127 181 - -
Trre9g03036 375 CDD RING-H2_EL5-like 133 175 - -
Trre9g03036 375 PANTHER RING FINGER DOMAIN-CONTAINING 55 183 - -
Trre9g03036 375 SMART ring_2 133 174 IPR001841 -
Trre9g03036 375 FunFam E3 ubiquitin-protein ligase ATL6 94 181 - -
Trre9g03036 375 Pfam Ring finger domain 132 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03036 Trre-Chr9 38675207 38676334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03036 22 291 Rapid Response to Elicitors AT3G05200 36.559 2.56e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03036 K10664 - gmx:100814384 285.804