Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03028 ATGGCTTATCCACATTATCGATCACAGTTTGGAGACACAACATTCACCAAGGTTTTTGTTGGAGGATTAGCTTGGGAAACACCAACCGATGAAATGAGAACATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAATACTGGAAAATCTAAAGGATATGGATTTGTAACATTTCGTGATCCAGAATCAGCAAGAAGAGCTTGTGCTGATCCAAACCCAGTAATTGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCATCACCACCAAGAGGGAGGGGTACATATCAAGGTGGAGGTATGGGGACTGGAGCACCGGGAGGAGCGGCGTACAGTGGTGTTCCGGCAGCAGGAGGACCACCACAATTGGCAGGAGGAGCAGGAACTCCAGTAATGTACCAACCATATGGCTACCCCACCTACACTCCTGAATATGGGTACCATCAAGCTACAATGTATAACCCTCAAATGCAGCAAGCACAATACTATCAACAACTCTATGGACCATCATCTTCAACAATGGCTTCACCATATTATTATGGCTATTCTATGCAAGCAGCTGCACCAAGAGGGGGTACATTTTCTACTCCTCAACCACATCGCATGGCAGCTGGACCATCCTATCTATACTACCCTCCTACACCAATCGAAGGAGGTTCCTTCTCTGCTACACCATATCGTCCAATTCAACAACAACCTTTAATAAGGCACCCTTCTCCTTCCCCTTCTCCTAATGATTCACAGAGTCAGCAACGTACCTCATCAGAGACAGCATCTGGAGTAGTTATGACTTCAGAAAGTTCAAATACTCAAGGGAAGAACAACAACTAA 864 0.4433 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTYQGGGMGTGAPGGAAYSGVPAAGGPPQLAGGAGTPVMYQPYGYPTYTPEYGYHQATMYNPQMQQAQYYQQLYGPSSSTMASPYYYGYSMQAAAPRGGTFSTPQPHRMAAGPSYLYYPPTPIEGGSFSATPYRPIQQQPLIRHPSPSPSPNDSQSQQRTSSETASGVVMTSESSNTQGKNNN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03028 287 Gene3D - 3 113 IPR012677 -
Trre9g03028 287 PANTHER BOULE-RELATED 6 266 - -
Trre9g03028 287 MobiDBLite consensus disorder prediction 231 287 - -
Trre9g03028 287 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Trre9g03028 287 SMART rrm1_1 17 89 IPR000504 GO:0003723
Trre9g03028 287 MobiDBLite consensus disorder prediction 252 287 - -
Trre9g03028 287 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Trre9g03028 287 MobiDBLite consensus disorder prediction 91 114 - -
Trre9g03028 287 CDD RRM_RBM24_RBM38_like 16 91 - -
Trre9g03028 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Trre9g03028 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03028 Trre-Chr9 38606158 38613321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03028 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 3.45e-15 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03028 9 38606158 38613321 Trre9g03028 9 38606158 38613321 ECH