Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03026 ATGAATCAAAACGATCTTCAGCCTCTACCATTGCTAAGTAGCTTCCTAGGTTCAACATCACAAGAACCTTTGCAACAAAATGAAAATCACAAATCATGCTATAATCAAGCTGAGGATGTTACAGTGGCCTTACACATAGGCCTTCCTGACAATAATTCAATTGAATCACCAATTGATAATGATTTTGTGAAAGTTCCAAATCATGTTCCTAACAATTACTGGATACCAACTCAAGAACAGATTCTCATTGGATTCAGTCATTTCTCTTGTCCTGTTTGCCACAAAACTTTCAATCGTTACAACAACCTTCAGATGCATATGTGGGGACACGGTTCGCAGTATCGAAGAGGACCAGACTCACTGAAAAGAACTCATCCGCGACCGCTATTAGACCTTCCATGCTATTGTTGTTCAAAGGGGTGTAAGAACAACATTGAACATCCAAGAGCTAAACCATTGAAGGATTTCAGAACATTGCAAACACATTACAAGAGAAAGCACGGATCGAAGACATTTACTTGTCGAAAATGTGGGAAGCCATTGGCAGTGAAAGGTGATTGGAGAACTCATGAGAAAAACTGTGGTAAGCGTTGGCTTTGTATCTGTGGTTCTGATTTCAAACACAAGAGATCACTTAAAGATCATATCAAAGCATTTGGATTTGGTCATAGCCCTTTTTCTTCTTCCTCTGATGGCATTTGA 702 0.3932 MNQNDLQPLPLLSSFLGSTSQEPLQQNENHKSCYNQAEDVTVALHIGLPDNNSIESPIDNDFVKVPNHVPNNYWIPTQEQILIGFSHFSCPVCHKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDLPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKTFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSDGI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03026 233 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Trre9g03026 233 Gene3D Classic Zinc Finger 87 110 - -
Trre9g03026 233 FunFam Zinc finger protein WIP2 141 223 - -
Trre9g03026 233 Gene3D Classic Zinc Finger 150 220 - -
Trre9g03026 233 PANTHER ZINC FINGER PROTEIN WIP2 20 227 IPR043584 GO:0003700|GO:0010468
Trre9g03026 233 Pfam Zinc finger, C2H2 type 88 107 IPR013087 -
Trre9g03026 233 SUPERFAMILY beta-beta-alpha zinc fingers 83 110 IPR036236 -
Trre9g03026 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Trre9g03026 233 SMART c2h2final6 135 167 IPR013087 -
Trre9g03026 233 SMART c2h2final6 172 192 IPR013087 -
Trre9g03026 233 SMART c2h2final6 88 110 IPR013087 -
Trre9g03026 233 FunFam zinc finger protein WIP2-like 87 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03026 Trre-Chr9 38588961 38590086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03026 40 229 C2H2 Transcription Factor Family AT1G34790 66.176 2.41e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g03026 zf-C2H2 0.00054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03026 - - cam:101491653 436.802