Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03011 ATGGAGCGCTATGAGGTTGTCAAAGATATTGGTTCTGGGAATTTTGCTGTTGCAAAGTCAGTTAGAGACATATTCACCAAAGAGCTTTTTGCTGTTAAGTTTATTGAAAGAGGCCAAAAGATTGATGAGCATGTCCAGAGGGAAATCATGAATCATAGATCATTGAAGCATCCTAATATTGTTAGATTCAAAGAGGTCCTTCTAACACCAACACATCTAGCCATAGTAATGGAGTATGCTGCTGGAGGAGAACTCTTTGAGAGGATATGCAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGGTTTTTCTTTCAGCAATTGATATCAGGAGTTAGTTACTGTCATTCAATGCAAATCTGCCATAGAGATTTGAAGCTGGAAAACACACTCTTAGATGGAAGCACTGCACCACGAGTCAAAATTTGTGACTTTGGTTACTCAAAGTCATCTGTGTTGCATTCACAACCGAAGTCGACGGTAGGAACTCCTGCTTACATTGCACCTGAAGTTCTGACGAAAAGAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGCGGAGTCACTTTATACGTGATGTTAGTCGGCGCGTATCCTTTTGAAGACCCTGAAGATCCAAGAAACTTTAGGAAAACAATTGCTAAGATACTTAGTGTCCAGTACAAAGTCCCTGATTTCGTACGAGTTTCATCGGAATGTATACATCTTATATCTCAAATATTTGTGGCTAATCCTGAAAAGAGAATAACAATACCAGAAATCAAAAACCATCCATGGTTTTTGAAGAACTTACCAGTAGAATTAATGGAAGGTGGAAGCTGGCAAACAAATGATGTAAATAATCCATCACAAAGTGTTGATGAAGTCCTGTCTATTATACAAGAGGCTAGAAAACCTCTTAACATTCCCAACAAGATTGGTGGACTTCTTAGTGGAGGCAGCATGGACCTAGATGATTTTGATGCTGACGTAGATCTTGAAGATATCGACACGTTTGGTGATTTCGTTTGCCCTCCTCTTTAA 1023 0.393 MERYEVVKDIGSGNFAVAKSVRDIFTKELFAVKFIERGQKIDEHVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTKREYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIAKILSVQYKVPDFVRVSSECIHLISQIFVANPEKRITIPEIKNHPWFLKNLPVELMEGGSWQTNDVNNPSQSVDEVLSIIQEARKPLNIPNKIGGLLSGGSMDLDDFDADVDLEDIDTFGDFVCPPL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03011 340 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03011 340 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre9g03011 340 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03011 340 SUPERFAMILY Protein kinase-like (PK-like) 1 270 IPR011009 -
Trre9g03011 340 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03011 340 FunFam Serine/threonine-protein kinase SAPK2 1 79 - -
Trre9g03011 340 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trre9g03011 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Trre9g03011 340 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Trre9g03011 340 CDD STKc_SnRK2 3 259 - -
Trre9g03011 340 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Trre9g03011 340 PANTHER SERINE/THREONINE KINASE 2 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03011 Trre-Chr9 38321231 38324239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03011 3 279 CBL-interacting serine-threonine protein kinases AT4G24400 41.958 9.40e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre9g03011 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03011 K14498 - gmx:100798091 605.905