Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03009 ATGGCAACCGCACCAACACCACGTGAAGAGTTCGTCTACATGGCGAAACTCGCCGAACAAGCCGAACGTTACGAAGAGATGGTAGAGTTCATGGAAAAAGTAACCGTCGCTGTCGAAAGCGAAGAACTCACCGTCGAAGAGAGGAACCTCCTCTCCGTCGCTTACAAGAACGTGATCGGAGCAAGACGTGCTTCATGGAGGATCATCTCTTCCATCGAACAGAAGGAAGAAAGCAGAGGTAACGATGAACACGTTTCTGTGATCCGTGATTACAGATCTAAGATCGAAACTGAACTTTCTAATATCTGTAACGGTATTCTGAAACTTCTTGATTCTCGCTTGATTCCTTCTGCTGCTTCTGGTGACTCTAAGGTTTTCTACCTTAAGATGAAAGGTGATTATCATAGGTATCTTGCTGAGTTTAAGAGCGGCGCTGAGCGTAAAGATGCCGCTGAAAGCACTCTTACTGCTTATAAATCTGCTCAGGATATTGCAAACTCTGAACTGCCACCAACTCACCCCATCAGGCTTGGTCTCGCTCTGAACTTCTCGGTGTTCTATTACGAGATTCTTAACTCTCCTGACCGTGCTTGTGGCCTTGCTAAACAGGCTTTTGATGAGGCTATTGCTGAATTGGATACATTGGGAGAGGAGTCATACAAGGATAGCACCTTGATCATGCAACTTCTCCGTGATAACCTCACCCTTTGGACCTCGGACATGCAGGATGACGGTGCAGATGAAATCAAAGAAGCTGCACCTAAAGGGGCCGATGAGCAGTAA 783 0.4662 MATAPTPREEFVYMAKLAEQAERYEEMVEFMEKVTVAVESEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDEHVSVIRDYRSKIETELSNICNGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKSGAERKDAAESTLTAYKSAQDIANSELPPTHPIRLGLALNFSVFYYEILNSPDRACGLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAAPKGADEQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03009 260 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Trre9g03009 260 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Trre9g03009 260 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Trre9g03009 260 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Trre9g03009 260 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Trre9g03009 260 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Trre9g03009 260 PANTHER 14-3-3 PROTEIN 8 242 IPR000308 -
Trre9g03009 260 SMART 1433_4 8 251 IPR023410 -
Trre9g03009 260 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Trre9g03009 260 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Trre9g03009 260 Pfam 14-3-3 protein 14 238 IPR023410 -
Trre9g03009 260 FunFam 14-3-3 protein epsilon 4 251 - -
Trre9g03009 260 PIRSF 14-3-3 2 250 IPR000308 -
Trre9g03009 260 Coils Coil 14 34 - -
Trre9g03009 260 Gene3D - 2 251 IPR036815 -
Trre9g03009 260 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03009 Trre-Chr9 38308671 38310535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03009 8 260 14-3-3 family AT1G78300 90.551 3.28e-171 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03009 K06630 - gmx:100794129 477.248