Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03001 ATGACCTTAGAGGCTGTGGTTTTTCCTCAAGATATACTCAGTTACGGTTGCAAAGATTACTTGTACTCTTTAGTTGAAATTGACAAAACTAGAAGTGAAGGATCTTGTAGCCACAACAATGGATTCCAAACAAAGGAAGAAGACCTTTTTGGAATCATCAACAATAACTTAAACCAAAATAGCTATGCAAATTGGGATTCTTCTTCTCCTTCAGTGATGCAAAATGGTAAAGACCAATGGGATTCAAACTCTTCCCCTGAAACTTCCAATCTTCCACCATTAGCTGTGGAAGCTACGACGACGACTACAAGTCGTCGACGCAAACGACGCTGTGCTGCGAGCCCAAAGAACGACGAGGAAATTGAGTGCCAGAGGATGACTCACATTGCGGTCGAGCGTAATAGAAGGAAACAAATGAACGAGTATCTAGCTGTCCTTAGATCCATGATGCCACGATCTTATGCAAAAAGGGGTGATCAAGCATCAATAGTTGGAGGAGCAATAAACTTCATGAAGGAGTTAGAACAGCATCTACAATCCATGAAAGGAAAAAAGAAAATAAACCAAAAACAGCATGAAAATGGTTCATCATCATCATCATCATCATCACCCTTTGCTGAGTTCTTCATGTTCCCCCAGTATTCGACATGTGAATCTCAGAGCAACACGTGCTACCCTGCCAACCAGATGAATCAGTCACGTGCCATGGCAGATATAGAAGTGACTTTGGTTGATAGCCATGCTAATATCAAGATAATGTTGAAGAAACGACAAGGACAAGTTATGAAGATGGTTGTTGGGCTTCAAAACCTAGGCTTCAACATTCTACACCTTAATGTTTCTACTGTGGATGATTTGGTCCTTGTCTCGGTTAGTGTCAAGGTAGAGGAAGGGTGTCAACTGAACACGGTGGATGAAATTGCATCAGCTGTGAATCAACTATCATGCAGAATCTACGTGGAATCTGTACTTTGA 975 0.4144 MTLEAVVFPQDILSYGCKDYLYSLVEIDKTRSEGSCSHNNGFQTKEEDLFGIINNNLNQNSYANWDSSSPSVMQNGKDQWDSNSSPETSNLPPLAVEATTTTTSRRRKRRCAASPKNDEEIECQRMTHIAVERNRRKQMNEYLAVLRSMMPRSYAKRGDQASIVGGAINFMKELEQHLQSMKGKKKINQKQHENGSSSSSSSSPFAEFFMFPQYSTCESQSNTCYPANQMNQSRAMADIEVTLVDSHANIKIMLKKRQGQVMKMVVGLQNLGFNILHLNVSTVDDLVLVSVSVKVEEGCQLNTVDEIASAVNQLSCRIYVESVL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03001 324 MobiDBLite consensus disorder prediction 64 119 - -
Trre9g03001 324 PANTHER MAX DIMERIZATION, MAD 75 318 - -
Trre9g03001 324 MobiDBLite consensus disorder prediction 179 203 - -
Trre9g03001 324 Gene3D - 115 202 IPR036638 GO:0046983
Trre9g03001 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 174 IPR011598 GO:0046983
Trre9g03001 324 Pfam Helix-loop-helix DNA-binding domain 124 175 IPR011598 GO:0046983
Trre9g03001 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 193 IPR036638 GO:0046983
Trre9g03001 324 MobiDBLite consensus disorder prediction 64 101 - -
Trre9g03001 324 Coils Coil 171 191 - -
Trre9g03001 324 SMART finulus 129 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03001 Trre-Chr9 38219949 38225199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03001 1 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.307 2.16e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g03001 HLH 7.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03001 - - gmx:100789380 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03001 9 38219949 38225199 Trre9g03001 9 38219949 38225199 ECH
Trre9g03001 9 38219949 38225199 Trre5g04623 5 48261522 48263681 PCT