Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03000 ATGGGTGCCGTATGCGGTTGTTTAAGGGGGCCGCCTCAGAGTCCACAAAATAATGGTAGTCATCATCATCATCAACATCAACATCATCAAGAAACTCGAAATATCAACACTTCTTTTGTTTACTCTTATAGACATAGTGAAACTACACAATATCCATTCTCAAAGAATCCTACCACAAATTCAGAATTAGTAACGTCAATCAAAGCTAAATCCGTCGAGTCCAGTTTTAAATATTTCGCATGTGAATCAGAATCATGGCATGAAAATTCTTGTGTTATATGTTTTGAAGAATATACGGATCACAATCCTAGGATTACTACGGAGTGTTGCCGTCAACATTATCACCTTACTTGTATATATGAATGGAAAAATAGGAGTGAAACTTGTCCAACTTGCAGACAGGAGATGATTTTTAAGGAAATGGCATGA 429 0.366 MGAVCGCLRGPPQSPQNNGSHHHHQHQHHQETRNINTSFVYSYRHSETTQYPFSKNPTTNSELVTSIKAKSVESSFKYFACESESWHENSCVICFEEYTDHNPRITTECCRQHYHLTCIYEWKNRSETCPTCRQEMIFKEMA 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03000 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 140 IPR013083 -
Trre9g03000 142 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Trre9g03000 142 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 27 140 - -
Trre9g03000 142 SUPERFAMILY RING/U-box 78 139 - -
Trre9g03000 142 SMART ring_2 91 132 IPR001841 -
Trre9g03000 142 Pfam Ring finger domain 89 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03000 Trre-Chr9 38197730 38201269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03000 65 140 C3H Transcription Factor Family AT5G38895 44.737 6.45e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03000 - - aprc:113870372 83.1889