Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02999 ATGGGAAGGAGTAAGGTACAGCTAAAACGGATCGAAAACAAGATCAATCGACATGTAACTTTCTCAAAAAGGAGAACCGGTTTGCTCAAGAAAGCTAATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTATCTTCTCTCATAATGGAAAGCTCTTTGAGTATTCAACTGATTCATGCATGGAGCAGATACTAGAACGCCATGAAAGGTATGGCTATGCTGAGAAACTACTAGTAGCAAATGATACACACACTCAGGAAAACTGGACACTTGAATACACTAGACTCAAAGCAAAGATTGATCTTTTGCAGCGAAACCACAGACACTATATGGGAGAAGATTTAGCTACAATGAGCCTGAAAGAGCTTCAATGTCTAGAGCAACAGTTAGATACTGGTCTCAAGAACATCCGTTCCCGCAGAACTCAAGTGATGTATGAGGCCATTTCTGAACTTCAGAAAAAGGAGAAAGGGATTCAAGAGCAGAATAACATGCTCTCAAAGGAGATTAAGGAGAAGGAGAAGGAGAAGGAAAAGGCCGTTGCACAAGAGGCTGCTGCTCAATGGGAGCAGACAAACTATAGGGTTGATACTTCTTTCTTATTACACGACCCTCTTCCCGGTTTGAACATGAGTGGCAATTACCGTGAGGGAGAACAAGAACATGGGAGGAACGGGCTTGACTTGACCCTAGAACCACTATATTATTAA 717 0.417 MGRSKVQLKRIENKINRHVTFSKRRTGLLKKANEISVLCDAEVALIIFSHNGKLFEYSTDSCMEQILERHERYGYAEKLLVANDTHTQENWTLEYTRLKAKIDLLQRNHRHYMGEDLATMSLKELQCLEQQLDTGLKNIRSRRTQVMYEAISELQKKEKGIQEQNNMLSKEIKEKEKEKEKAVAQEAAAQWEQTNYRVDTSFLLHDPLPGLNMSGNYREGEQEHGRNGLDLTLEPLYY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02999 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Trre9g02999 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre9g02999 238 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Trre9g02999 238 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Trre9g02999 238 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g02999 238 Coils Coil 88 108 - -
Trre9g02999 238 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Trre9g02999 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre9g02999 238 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g02999 238 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Trre9g02999 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre9g02999 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre9g02999 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre9g02999 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre9g02999 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre9g02999 238 Coils Coil 151 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02999 Trre-Chr9 38188646 38195189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02999 1 237 MADS-box Gene Family AT1G26310 59.524 4.09e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre9g02999 K-box 8.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02999 K09264 - gmx:100819745 332.413