Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02991 ATGCTGCAATTCTCTGGTTCAGCAACATTTACGCCTCAGGAATATGATGATGAGAAAATTCCACGCTATGTTTTTGAATTCGTTCCTTTTGAAGAGTTGCACAAGCGATTCAATAAGGAGGCTCACGCATATGTAATTGGGATTATTGATATAACTCCAATTGAGGAGAGGACAACTGCTTATGGAAAGTCAGATATCATGTCACTCTATTTAAGGAATAAAAGTGGAGACATATTCAAGGTCACATTGTGGGGTGACTCTGTTTCAATGTTTGATAAAATATTCAAAAAATACAAGCATGCTGCTCTTCAGCCAAACTTGACAATTTTCACATCCATCTTGGTTAAACAATTTCAAGGTGAGTTTTTGGTTCAATCTTCAAGATCCACAACAATTTATATCAACATCGACATTCCAGAAGCTATTGAGCTCGCTCAAGCGTCCAAGGCTGCCAATGTCATGGATGACAATGCAAATCTTTCTCCTCTTGCTGTCCGTCCTAAAATTGACAAAGTAAAGACTGTATCTGGAATTTCGGACATAGCAGCTGCAGGGGATAATATGAGTGCTGTCTACCACTGTGCTGCAACAGTCGAGGACATTTTGGTGAAAAATGGATGGTACTATGTTTCGTGTCCTGGGTGTAGAAAAACTGTGTTTTCTACTGAAACATATTTTCACTGTGATAATTGCAAAGTGGATGTGGCATATCCAAAGACTAGGTTCCGTTTAGAGCTTCATGTGAAAGACTTTACCGCTTCAACCATATTTGTATTGTTTGATGATATTGCTGAGCAGGTGGTGCAGGTTAAGCTGGGTGACCTCACCTCAAATTTAGAAAAGTGTTACTTAGTGGAAAATGTAAAGGACTATGAACTGCCTGAACAGCTCCTTAAAATCATTGGTACCACACACGTTTTTCAGATAAGGATGGGTTCTTACTTTGAAAGTCGTGGACGACAGAGTTTCACAGCAAATAAAATTTTGAAGCCAATTGTCAAGGTGGTTAATTTTGTATAA 1020 0.3873 MLQFSGSATFTPQEYDDEKIPRYVFEFVPFEELHKRFNKEAHAYVIGIIDITPIEERTTAYGKSDIMSLYLRNKSGDIFKVTLWGDSVSMFDKIFKKYKHAALQPNLTIFTSILVKQFQGEFLVQSSRSTTIYINIDIPEAIELAQASKAANVMDDNANLSPLAVRPKIDKVKTVSGISDIAAAGDNMSAVYHCAATVEDILVKNGWYYVSCPGCRKTVFSTETYFHCDNCKVDVAYPKTRFRLELHVKDFTASTIFVLFDDIAEQVVQVKLGDLTSNLEKCYLVENVKDYELPEQLLKIIGTTHVFQIRMGSYFESRGRQSFTANKILKPIVKVVNFV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02991 339 SUPERFAMILY Nucleic acid-binding proteins 172 312 IPR012340 -
Trre9g02991 339 Gene3D - 19 155 IPR012340 -
Trre9g02991 339 Pfam Replication factor-A C terminal domain 193 325 IPR013955 -
Trre9g02991 339 SUPERFAMILY Nucleic acid-binding proteins 25 146 IPR012340 -
Trre9g02991 339 Gene3D - 163 335 IPR012340 -
Trre9g02991 339 CDD RPA1_DBD_B_like 45 149 - -
Trre9g02991 339 CDD RPA1_DBD_C 175 334 IPR047192 -
Trre9g02991 339 PANTHER OS03G0429900 PROTEIN 59 329 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02991 Trre-Chr9 38081686 38083469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02991 16 311 Core DNA Replication Machinery Family AT4G19130 24.437 8.14e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02991 - - tpra:123910350 491.5