Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02990 ATGGAATCTTGGAGTTACATCCCAGAAGAGAGAAGCTATATGTTTTCTGATGAAATGGACTTTTCACTTGATGCTTTTATGAGAAGTAGAAAACCATTGGTTGAATGGGAGAACAAATCTTCATGTAACTTTGAAAGAGATGGATTTAAAGGTATGGAGTTTGTGGATTTGGGATTTCCCGATTTTCTACAAAAGTCTTTTCATAGTAGCAAGCCTATGGAGACATCTAGGATTGTTCATGGTTCGGTTCAGACATCTAGCTGTGAGCTGGATAGTAATAATTCTAGTAAAAGAGGGAATTCCTCTTCACATCTTATTGCTTTTGATTCATCTTTTGGCGAAGAAGATTCCGAGCCAAAGCATTTAAGTTCTTCTCTAGTTGCATCAAAAAATCATGATTCTTCCATGATTGGTCTGAAGCTAGAGAGATTAGCAGATTTTCAAGGTGCAAATATTGACAGAGATGCAAAAGAATTCACTTCTACGGCTATGCATCAAACCTCACTAGCTAAGAGAGCTCGCACCTCTAGTTTACCTGCTCAGGCTCCTGTATGTCAAGTTTATGGTTGTAATATGGACCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAGAGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTGAATGGCATTGAACAGAGATTTTGTCAGCAGTGCAGCAGGTTCCATTTGGTAGCTGAATTCGATGATGGTAAACGTAGTTGTCGCAGACGTCTAGCTGGACACAATGAACGTCGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGATTCTTCAATCATATCAAGGTACTAACAACTTTTCCTTTCAAGACATATTTCAAAATGGACATATCAAACTTGAAGAGGAGCCAATTTGCAGCCCTCAACTAGAACCATCCACCACACTTGGTCACGAGTTATCTACCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCCATCGCGCCACACAGCAGGAAATGCATTACCAACTTCTCGTACTTTTCGGGACATCCGCACACAAGATAGAGACGACCAAGTTTCTGAAACGCCTTTGCCTTTGAGGATAAGCTCTGTGGATAAACATGAACAAAATCAGTGTTTTCCATCTGGGATAAACTCTAAGGAAGTTATCAAATCTGAACATGGAGGAGCCACTGTTGATTTGTTTCAACTATCTTTTCATCTTCAAAGGGTGGAACAGCAAAGAAATTCTGTTTTGGTCAAGTGGGAAGATGAGGATTGCTCTTTCCCAACAGTGTAA 1290 0.3992 MESWSYIPEERSYMFSDEMDFSLDAFMRSRKPLVEWENKSSCNFERDGFKGMEFVDLGFPDFLQKSFHSSKPMETSRIVHGSVQTSSCELDSNNSSKRGNSSSHLIAFDSSFGEEDSEPKHLSSSLVASKNHDSSMIGLKLERLADFQGANIDRDAKEFTSTAMHQTSLAKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHRVCDVHSKTAKVIVNGIEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSYQGTNNFSFQDIFQNGHIKLEEEPICSPQLEPSTTLGHELSTRALSLLSAQSQNPSRHTAGNALPTSRTFRDIRTQDRDDQVSETPLPLRISSVDKHEQNQCFPSGINSKEVIKSEHGGATVDLFQLSFHLQRVEQQRNSVLVKWEDEDCSFPTV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02990 429 SUPERFAMILY SBT domain 183 264 IPR036893 GO:0003677|GO:0005634
Trre9g02990 429 Gene3D - 176 246 IPR036893 GO:0003677|GO:0005634
Trre9g02990 429 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 101 339 IPR044817 GO:0003677
Trre9g02990 429 MobiDBLite consensus disorder prediction 74 101 - -
Trre9g02990 429 FunFam Squamosa promoter-binding-like protein 14 176 246 - -
Trre9g02990 429 ProSiteProfiles Zinc finger SBP-type profile. 182 259 IPR004333 GO:0003677
Trre9g02990 429 Pfam SBP domain 185 258 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02990 Trre-Chr9 38072689 38075738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02990 137 427 SBP-box Gene Family AT1G69170 40.294 2.72e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre9g02990 SBP 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02990 - - psat:127119704 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02990 9 38072689 38075738 Trre9g02990 9 38072689 38075738 ECH