Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02986 ATGAACCATGAAGAGAAAGTTACCATGGACTTGATTCCAGCTTCTGATCAACACCTTTGTTATGTTCGTTGCAACTTTTGTAACACTGTCCTTGCTGTTGGAATACCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACTACCAGACCACCAAATTCCAAAACTCAAACTGTTGATCACACCCTAACTCTCCAGCAGGGGATTTACAGTAGCAAAAAGGGTCAACCATCACCATCTTCATCTTCTTCACCAACTACTTCAACTGACTCATTGTCCCCTAAACCACCACCATTTGTTGTTAAACCTCCTGAGAAGAAGCATCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAAGAGATACAGCGCATCAAAGCAGCCAATCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAGGTTTGTCCCAAATTCACCAACCAGTTCAATGTCCGCAACTAAAAGGAACCTTGTAAGAATTAATTAA 537 0.4339 MNHEEKVTMDLIPASDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTQTVDHTLTLQQGIYSSKKGQPSPSSSSSPTTSTDSLSPKPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFVPNSPTSSMSATKRNLVRIN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02986 178 CDD HMG-box_SF 119 155 - -
Trre9g02986 178 PANTHER PROTEIN YABBY 6-RELATED 15 170 IPR006780 GO:0007275
Trre9g02986 178 Pfam YABBY protein 16 158 IPR006780 GO:0007275
Trre9g02986 178 MobiDBLite consensus disorder prediction 78 117 - -
Trre9g02986 178 FunFam protein CRABS CLAW isoform X3 110 170 - -
Trre9g02986 178 SUPERFAMILY HMG-box 101 157 IPR036910 -
Trre9g02986 178 Gene3D High mobility group box domain 105 172 IPR036910 -
Trre9g02986 178 MobiDBLite consensus disorder prediction 78 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02986 Trre-Chr9 38034571 38036982 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02986 1 169 C2C2-YABBY Transcription Factor Family AT1G69180 65.116 4.04e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre9g02986 YABBY 7.7e-55 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02986 K25796 - gmx:100819079 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02986 9 38034571 38036982 Trre9g02986 9 38034571 38036982 ECH