Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02985 ATGAACCATGAAGAGAAAGTTACCATGGACTTGATTCCAGCTTCTGATCAACACCTTTGTTATGTTCGTTGCAACTTTTGTAACACTGTCCTTGCTGTTGGAATACCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACTACCAGACCACCAAATTCCAAAACTCAAACTGTTGATCACACCCTAACTCTCCAGGGGATTTACAGTAGCAAAAAGGGTCAACCATCACCATCTTCATCTTCTTCACCAACTACTTCAACTGACTCATTGTCCCCTAAACCACCACCATTTGTTGTTAAACCTCCTGAGAAGAAGCATCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAAGAGATACAGCGCATCAAAGCAGCCAATCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAGGTTTGTCCCAAATTCACCAACCAGTTCAATGTCCGCAACTAAAAGGAACCTTGAATGA 525 0.44 MNHEEKVTMDLIPASDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTQTVDHTLTLQGIYSSKKGQPSPSSSSSPTTSTDSLSPKPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFVPNSPTSSMSATKRNLE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02985 174 MobiDBLite consensus disorder prediction 77 103 - -
Trre9g02985 174 Gene3D High mobility group box domain 104 171 IPR036910 -
Trre9g02985 174 FunFam protein CRABS CLAW isoform X3 109 169 - -
Trre9g02985 174 CDD HMG-box_SF 118 154 - -
Trre9g02985 174 MobiDBLite consensus disorder prediction 77 116 - -
Trre9g02985 174 Pfam YABBY protein 16 157 IPR006780 GO:0007275
Trre9g02985 174 PANTHER PROTEIN YABBY 6-RELATED 15 169 IPR006780 GO:0007275
Trre9g02985 174 SUPERFAMILY HMG-box 100 156 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02985 Trre-Chr9 38034571 38037081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02985 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 65.698 6.61e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre9g02985 YABBY 1.8e-54 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02985 K25796 - gmx:100819079 281.182