Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02967 ATGCATAATATCTTTTCTCTATATATATTTTCAAAACATTTGTCAAATTTGGCAGGATTGAATAGGTGCAGAAAAAGTTGTAGTCTTAGGTGGTTAAATTATTTAAGCCCCAACATCAAAAGAGGAAGCTTTGCTGAAGATGAAATTGATATGATCATAAGGCTACACAATCTCCTAGGGAATAGATGGTCATTGATTGCTGGAAGGCTTCCTGGTAGAACGTCCAATGATGTGAAGAATTATTGGAATGCACACTTGATTAAAAAGGTGGTTTCAAAAAAAGAAGAAGAGAAGAAACATAAGGAAACCATGAAAACTCATGAAGTTATTAAACCTCGACCTATAACTTTTTCAACTAATTCACCTTGGTTGAAAGGAAAACATAATAATTTTGTGCCACAACCAATATTGGCTTCAAATAAAGATGATAAAATTCCTACATATCATGATGATCAATTGGAGACTATGCAGGTTCCAAATCATATTGGTAGAGATTGTGCTTCTACATCAAAACCAAGTCTAGGTAATGTGCCACTACCTTGTGCAATGTCTATGGACAGTTTATGGAACTTGGAGGAGCCTTTAGGTGGTGAAATAATTGGCTCATGCTCTTCATTTGAAGAGGGGAATTCTAGGAGGTGGTCTTCCGAAATGTTGGATATGCCTTGA 669 0.3572 MHNIFSLYIFSKHLSNLAGLNRCRKSCSLRWLNYLSPNIKRGSFAEDEIDMIIRLHNLLGNRWSLIAGRLPGRTSNDVKNYWNAHLIKKVVSKKEEEKKHKETMKTHEVIKPRPITFSTNSPWLKGKHNNFVPQPILASNKDDKIPTYHDDQLETMQVPNHIGRDCASTSKPSLGNVPLPCAMSMDSLWNLEEPLGGEIIGSCSSFEEGNSRRWSSEMLDMP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02967 222 SMART sant 40 88 IPR001005 -
Trre9g02967 222 SUPERFAMILY Homeodomain-like 21 86 IPR009057 -
Trre9g02967 222 CDD SANT 46 86 IPR001005 -
Trre9g02967 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 90 IPR017930 -
Trre9g02967 222 Pfam Myb-like DNA-binding domain 41 85 IPR001005 -
Trre9g02967 222 FunFam Transcription factor MYB113 43 115 - -
Trre9g02967 222 Gene3D - 9 40 - -
Trre9g02967 222 ProSiteProfiles Myb-like domain profile. 36 86 IPR001005 -
Trre9g02967 222 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 127 - -
Trre9g02967 222 Gene3D - 42 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02967 Trre-Chr9 37585095 37587533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02967 18 144 MYB Transcription Factor Family AT1G66370 48.993 2.81e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g02967 Myb_DNA-binding 5.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02967 - K09422 mtr:11424892 261.922