Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02961 ATGCTTAACTTATCATCTTCTTCTTCTTCTCCTTATTCATTCTTTTGTATCATTATTCTCATCCAAACAACACTTCTTTTTACTTTCTCTTCTTCTAACAATGAAGCCAAAATTCTCTTCACATGGCTTCATAGCTCATCTTCACAACCACCTTCATCATTCTCTAACTGGAACATCCATGATACTAATCCATGCAAATGGACCTCCATAACATGTTCATCACTCTCTTTTGTAACTGAAATCAATATTCAATCCATTCCTCTTCAACTTCCTATACCTTCCAATCTCTCTTCATTTCCTTATCTTAACAAACTTGTCATTTCTGATACCAATCTCACTGGTACTATTCCTTTTGACATTGGTGATTGTTCTTCACTCACTGTTATTGATCTTAGCTTTAACAATCTTGTTGGTTCTATTCCTTCAAGTATTGGAAAGTTAGAGAATCTAGTGAACTTGTCCTTGAATTCGAACCAACTTACCGGAAAAATTCCGGATGAGATAAGTACTTGCATTAGTCTCAGAAATCTTCACCTTTTTGATAATCAGTTAGATGGAAGTATCCCGAATTCGCTCGGAAAGTTGTCGAAACTCGAAGTACTTAGAGCAGGTGGAAACAAAGATATAATAGGGAAAATTCCAGAAGAGATTGGAGAATGTAGTAATTTGACAGTTTTAGGTCTTGCTGATACAAGAATATCAGGTTCTTTACCTGTTTCTTTTGGTAAACTTCAAAAGCTTAAAACTTTGTCAATTTATACAACTATGCTATCAGGTGAAATTCCTAAAGAGTTAGGTAACTGTTCTGAACTTATTGATTTGTTTCTATATGAAAATAGCTTATCAGGATCTATACCATCAGAGATTGGTAAGCTAAAGAAGCTTGAACAGTTGTTTTTATGGCAGAATGGTCTTGTTGGTGCTATTCCAAATGAGATTGGTAATTGTTCAAGTTTGAGAAACATTGATCTAAGTTTGAATTCTTTATCTGGAACTATACCTTTGTCTTTAGGAGGTCTTTTTGAGCTTGAAGAGTTTATGATTAGTGATAATAATGTATCTGGTTCTATACCTTCAACTCTTTCAAATGCTGAAAAGCTTCAACAGTTGCAAGTTGATACAAATCAGCTTTCAGGTTTGATTCCATCAGAGATTGGAAAGTTGTCAAATCTTTTGGTGTTTTTTGCTTGGCAGAATCAGCTTGAAGGAAGCATTCCTTCAAGTTTAGGTAACTGTAGTAAACTTCAAGCACTTGATTTGTCTAGAAATTCACTCACTGGTAGCATTCCTTCGGGACTATTTCAGCTTCAAAATCTCACAAAACTGCTTTTGATTTCAAATGATATATCTGGTTCTATACCATCAGAAATTGGTAGTTGCATGTCTCTTATAAGGTTGAGGCTTGGAAACAATAGGATTACTGGAAGCATTCCTAAGACTATAGGAAGTCTTAAGAATTTGAACTTTTTAGATCTCTCTGGGAACCGGCTTTCTGGGCCGGTTCCTGATGAAATAAGAAGCTGCATACAACTTCAAATGATTGACTTCAGTACTAACAACTTGGAAGGTTCACTTCCTAATTCCTTGTCGTCATTATCGTCGCTTCAGGTATTGGATGTTTCTTTTAACAAGTTTTCAGGTCCGTTGCCGGCGAGTTTAGGTCGTCTTGTTTCTCTGAGTAAGTTAATCTTAGGGAATAACTTGTTTTCTGGGCCAATTCCTGCATCAGTAAGCCTATGTTCAAATCTTCAACTTCTTGATCTTAGTAGCAATCAGCTCACCGGAAGCATACCGGCTGAATTAGGCCAAATCGAAGCTCTCGAAATCGCTCTCAATCTTAGTTGCAATTTACTAAGTGGAACAATACCACCTCAGATATCTGCTCTTAACAAGCTTTCCATATTAGACATTTCACATAACCAGTTAGAAGGAGATTTGCAAACTCTTGCAGAGCTAGATAACCTTGTTTCCCTCAATGTTTCTTACAACAAGTTCACAGGATATCTTCCAGATAACAATCTTTTCAGGCAGTTAACATTGAAAGACCTTACCGGAAATCAAGGACTTTGCACTTCAGGTCAGGACTTATGTTTTGTAAAGGATTCTAGCAAGACCGATATGGCGTTGAATGAGCATGAGATAAGGAAATCGCGAAGAATTAAGCTAGCGATTGGACTGCTGATAGCATTAACAGTAGTAATGATACTTATGGGGATAACTGCTGTGGTGAAAGCAAGAAGAACCATTCGAGACGATGATTCGGAATTAGGAGACTCATGGCCATGGCAATTCATACCATTCCAGAAACTAAACTTTTCAGTTGAACAAGTACTGAGATGTTTGATTGATAGGAATATAATCGGCAAGGGATGTTCCGGTGTTGTTTATCGAGGTGAAATGGATAATGGTGAATTCATTGCAGTGAAGAAACTGTGGCCTATAACAACTGATGAAGGAGAAGCATTGAAGGATTACAAAAGTGGAGTTCGAGATTCATTCTCGGCTGAGGTCAAGTGTCTTGGCTCGATTCGTCATAAGAACATTGTCAGGTTCTTAGGTTGTTGTTGGAACAAGAAAACAAGATTGCTTATTTTTGATTATATGCCAAATGGAAGTTTAAGCAGTGTACTTCATGAGAGGACTGGAAATTCTCTGGATTGGGAACTTAGGTTCCGAATTCTGTTAGGTTCTGCAGAAGGACTTGCATATCTACATCATGACTGTGTTCCTCCAATAGTCCACAGAGATATTAAAGCCAATAACATCTTAATTGGCCTTGAATTTGAACCTTATATTGCGGACTTCGGATTAGCTAAGCTTGTTGATGACGGTGATGTTGGTCGTTCTTCCAATACCGTTGCTGGTTCGTATGGATATATTGCTCCAGAATATGGTTATATGATGAAGATCACGGAGAAGAGCGACGTTTATAGCTACGGTGTAGTTTTGCTAGAAGTCTTGACTGGCAAGCAACCAATAGATCCAACAATACCAGATGGTTTACATGTTGTTGATTGGGTGAGACAGAAAAGAGGTCTTGAAGTACTTGATCCTACCTTACTTTCAAGACCGGAATCGGAAATAGAAGAAATGATCCAAGCATTGGGAATAGCCCTATTGTGTGTAAATTCATCTCCTGATGAAAGACCAACAATGAGAGATATAGCAGCAATGCTCAAAGAGATAAAACATGAAAGAGAAGAATATGCAAAATTTGATGTGCTTTTAAAAGGGTCTACTGCAATTGATGCTAAAGTTCTTGCAACATCTTCTAATGCATCAGCTATGCAAAGTTTGAATACAAAAAGCAATAATACAAGCTTCTCTGTGTCTTCACTTCTTCATTCATCTTCAAGTTCCAAATTGAGTTTCAAATGA 3378 0.3727 MLNLSSSSSSPYSFFCIIILIQTTLLFTFSSSNNEAKILFTWLHSSSSQPPSSFSNWNIHDTNPCKWTSITCSSLSFVTEINIQSIPLQLPIPSNLSSFPYLNKLVISDTNLTGTIPFDIGDCSSLTVIDLSFNNLVGSIPSSIGKLENLVNLSLNSNQLTGKIPDEISTCISLRNLHLFDNQLDGSIPNSLGKLSKLEVLRAGGNKDIIGKIPEEIGECSNLTVLGLADTRISGSLPVSFGKLQKLKTLSIYTTMLSGEIPKELGNCSELIDLFLYENSLSGSIPSEIGKLKKLEQLFLWQNGLVGAIPNEIGNCSSLRNIDLSLNSLSGTIPLSLGGLFELEEFMISDNNVSGSIPSTLSNAEKLQQLQVDTNQLSGLIPSEIGKLSNLLVFFAWQNQLEGSIPSSLGNCSKLQALDLSRNSLTGSIPSGLFQLQNLTKLLLISNDISGSIPSEIGSCMSLIRLRLGNNRITGSIPKTIGSLKNLNFLDLSGNRLSGPVPDEIRSCIQLQMIDFSTNNLEGSLPNSLSSLSSLQVLDVSFNKFSGPLPASLGRLVSLSKLILGNNLFSGPIPASVSLCSNLQLLDLSSNQLTGSIPAELGQIEALEIALNLSCNLLSGTIPPQISALNKLSILDISHNQLEGDLQTLAELDNLVSLNVSYNKFTGYLPDNNLFRQLTLKDLTGNQGLCTSGQDLCFVKDSSKTDMALNEHEIRKSRRIKLAIGLLIALTVVMILMGITAVVKARRTIRDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLIDRNIIGKGCSGVVYRGEMDNGEFIAVKKLWPITTDEGEALKDYKSGVRDSFSAEVKCLGSIRHKNIVRFLGCCWNKKTRLLIFDYMPNGSLSSVLHERTGNSLDWELRFRILLGSAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDVGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPTLLSRPESEIEEMIQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSTAIDAKVLATSSNASAMQSLNTKSNNTSFSVSSLLHSSSSSKLSFK 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02961 1125 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 207 430 - -
Trre9g02961 1125 Gene3D Transferase(Phosphotransferase) domain 1 868 1079 - -
Trre9g02961 1125 Gene3D Ribonuclease Inhibitor 428 523 IPR032675 -
Trre9g02961 1125 Gene3D Ribonuclease Inhibitor 332 427 IPR032675 -
Trre9g02961 1125 ProSitePatterns Protein kinases ATP-binding region signature. 787 810 IPR017441 GO:0005524
Trre9g02961 1125 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 764 867 - -
Trre9g02961 1125 SUPERFAMILY Protein kinase-like (PK-like) 759 1060 IPR011009 -
Trre9g02961 1125 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
Trre9g02961 1125 Pfam Protein tyrosine and serine/threonine kinase 785 1058 IPR001245 GO:0004672|GO:0006468
Trre9g02961 1125 SUPERFAMILY L domain-like 381 696 - -
Trre9g02961 1125 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 868 1077 - -
Trre9g02961 1125 PRINTS Leucine-rich repeat signature 415 428 - -
Trre9g02961 1125 PRINTS Leucine-rich repeat signature 484 497 - -
Trre9g02961 1125 SMART LRR_typ_2 652 677 IPR003591 -
Trre9g02961 1125 SMART LRR_typ_2 292 316 IPR003591 -
Trre9g02961 1125 SMART LRR_typ_2 532 556 IPR003591 -
Trre9g02961 1125 SMART LRR_typ_2 580 604 IPR003591 -
Trre9g02961 1125 SMART LRR_typ_2 412 436 IPR003591 -
Trre9g02961 1125 SMART LRR_typ_2 147 171 IPR003591 -
Trre9g02961 1125 SMART LRR_typ_2 484 508 IPR003591 -
Trre9g02961 1125 SMART LRR_sd22_2 580 601 - -
Trre9g02961 1125 SMART LRR_sd22_2 629 654 - -
Trre9g02961 1125 SMART LRR_sd22_2 484 499 - -
Trre9g02961 1125 SMART LRR_sd22_2 147 170 - -
Trre9g02961 1125 SMART LRR_sd22_2 292 324 - -
Trre9g02961 1125 FunFam Putative LRR receptor-like serine/threonine-protein kinase 610 695 - -
Trre9g02961 1125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 912 924 IPR008271 GO:0004672|GO:0006468
Trre9g02961 1125 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Trre9g02961 1125 Gene3D Phosphorylase Kinase; domain 1 768 867 - -
Trre9g02961 1125 FunFam Nuclear pore complex protein NUP107 32 189 - -
Trre9g02961 1125 Gene3D Ribonuclease Inhibitor 228 331 IPR032675 -
Trre9g02961 1125 FunFam LRR receptor-like serine/threonine-protein kinase 530 605 - -
Trre9g02961 1125 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 431 525 - -
Trre9g02961 1125 SMART serkin_6 781 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02961 1125 Gene3D Ribonuclease Inhibitor 147 224 IPR032675 -
Trre9g02961 1125 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 303 1059 - -
Trre9g02961 1125 Gene3D Ribonuclease Inhibitor 610 697 IPR032675 -
Trre9g02961 1125 Gene3D Ribonuclease Inhibitor 524 609 IPR032675 -
Trre9g02961 1125 ProSiteProfiles Protein kinase domain profile. 781 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02961 1125 SUPERFAMILY L domain-like 43 398 - -
Trre9g02961 1125 Gene3D Ribonuclease Inhibitor 34 146 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02961 Trre-Chr9 37490718 37494428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02961 53 1078 Receptor kinase-like Gene Family AT5G56040 49.376 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g02961 PK_Tyr_Ser-Thr 6.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02961 - - gmx:100818541 1718.75