Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02960 ATGTTTTCATTGTTTTCAATGCTTAACTTATCATCTTCTTCTTCTTCTCCTTATTCATTCTTTTGTATCATTATTCTCATCCAAACAACACTTCTTTTTACTTTCTCTTCTTCTAACAATGAAGCCAAAATTCTCTTCACATGGCTTCATAGCTCATCTTCACAACCACCTTCATCATTCTCTAACTGGAACATCCATGATACTAATCCATGCAAATGGACCTCCATAACATGTTCATCACTCTCTTTTGTAACTGAAATCAATATTCAATCCATTCCTCTTCAACTTCCTATACCTTCCAATCTCTCTTCATTTCCTTATCTTAACAAACTTGTCATTTCTGATACCAATCTCACTGGTACTATTCCTTTTGACATTGGTGATTGTTCTTCACTCACTGTTATTGATCTTAGCTTTAACAATCTTGTTGGTTCTATTCCTTCAAGTATTGGAAAGTTAGAGAATCTAGTGAACTTGTCCTTGAATTCGAACCAACTTACCGGAAAAATTCCGGATGAGATAAGTACTTGCATTAGTCTCAGAAATCTTCACCTTTTTGATAATCAGTTAGATGGAAGTATCCCGAATTCGCTCGGAAAGTTGTCGAAACTCGAAGTACTTAGAGCAGGTGGAAACAAAGATATAATAGGGAAAATTCCAGAAGAGATTGGAGAATGTAGTAATTTGACAGTTTTAGGTCTTGCTGATACAAGAATATCAGGTTCTTTACCTGTTTCTTTTGGTAAACTTCAAAAGCTTAAAACTTTGTCAATTTATACAACTATGCTATCAGGTGAAATTCCTAAAGAGTTAGGTAACTGTTCTGAACTTATTGATTTGTTTCTATATGAAAATAGCTTATCAGGATCTATACCATCAGAGATTGGTAAGCTAAAGAAGCTTGAACAGTTGTTTTTATGGCAGAATGGTCTTGTTGGTGCTATTCCAAATGAGATTGGTAATTGTTCAAGTTTGAGAAACATTGATCTAAGTTTGAATTCTTTATCTGGAACTATACCTTTGTCTTTAGGAGGTCTTTTTGAGCTTGAAGAGTTTATGATTAGTGATAATAATGTATCTGGTTCTATACCTTCAACTCTTTCAAATGCTGAAAAGCTTCAACAGTTGCAAGTTGATACAAATCAGCTTTCAGGTTTGATTCCATCAGAGATTGGAAAGTTGTCAAATCTTTTGGTGTTTTTTGCTTGGCAGAATCAGCTTGAAGGAAGCATTCCTTCAAGTTTAGGTAACTGTAGTAAACTTCAAGCACTTGATTTGTCTAGAAATTCACTCACTGGTAGCATTCCTTCGGGACTATTTCAGCTTCAAAATCTCACAAAACTGCTTTTGATTTCAAATGATATATCTGGTTCTATACCATCAGAAATTGGTAGTTGCATGTCTCTTATAAGGTTGAGGCTTGGAAACAATAGGATTACTGGAAGCATTCCTAAGACTATAGGAAGTCTTAAGAATTTGAACTTTTTAGATCTCTCTGGGAACCGGCTTTCTGGGCCGGTTCCTGATGAAATAAGAAGCTGCATACAACTTCAAATGATTGACTTCAGTACTAACAACTTGGAAGGTTCACTTCCTAATTCCTTGTCGTCATTATCGTCGCTTCAGGTATTGGATGTTTCTTTTAACAAGTTTTCAGGTCCGTTGCCGGCGAGTTTAGGTCGTCTTGTTTCTCTGAGTAAGTTAATCTTAGGGAATAACTTGTTTTCTGGGCCAATTCCTGCATCAGTAAGCCTATGTTCAAATCTTCAACTTCTTGATCTTAGTAGCAATCAGCTCACCGGAAGCATACCGGCTGAATTAGGCCAAATCGAAGCTCTCGAAATCGCTCTCAATCTTAGTTGCAATTTACTAAGTGGAACAATACCACCTCAGATATCTGCTCTTAACAAGCTTTCCATATTAGACATTTCACATAACCAGTTAGAAGGAGATTTGCAAACTCTTGCAGAGCTAGATAACCTTGTTTCCCTCAATGTTTCTTACAACAAGTTCACAGGATATCTTCCAGATAACAATCTTTTCAGGCAGTTAACATTGAAAGACCTTACCGGAAATCAAGGACTTTGCACTTCAGGTCAGGACTTATGTTTTGTAAAGGATTCTAGCAAGACCGATATGGCGTTGAATGAGCATGAGATAAGGAAATCGCGAAGAATTAAGCTAGCGATTGGACTGCTGATAGCATTAACAGTAGTAATGATACTTATGGGGATAACTGCTGTGGTGAAAGCAAGAAGAACCATTCGAGACGATGATTCGGAATTAGGAGACTCATGGCCATGGCAATTCATACCATTCCAGAAACTAAACTTTTCAGTTGAACAAGTACTGAGATGTTTGATTGATAGGAATATAATCGGCAAGGGATGTTCCGGTGTTGTTTATCGAGGTGAAATGGATAATGGTGAATTCATTGCAGTGAAGAAACTGTGGCCTATAACAACTGATGAAGGAGAAGCATTGAAGGATTACAAAAGTGGAGTTCGAGATTCATTCTCGGCTGAGGTCAAGTGTCTTGGCTCGATTCGTCATAAGAACATTGTCAGGTTCTTAGGTTGTTGTTGGAACAAGAAAACAAGATTGCTTATTTTTGATTATATGCCAAATGGAAGTTTAAGCAGTGTACTTCATGAGAGGACTGGAAATTCTCTGGATTGGGAACTTAGGTTCCGAATTCTGTTAGGTTCTGCAGAAGGACTTGCATATCTACATCATGACTGTGTTCCTCCAATAGTCCACAGAGATATTAAAGCCAATAACATCTTAATTGGCCTTGAATTTGAACCTTATATTGCGGACTTCGGATTAGCTAAGCTTGTTGATGACGGTGATGTTGGTCGTTCTTCCAATACCGTTGCTGGTTCGTATGGATATATTGCTCCAGAATATGGTTATATGATGAAGATCACGGAGAAGAGCGACGTTTATAGCTACGGTGTAGTTTTGCTAGAAGTCTTGACTGGCAAGCAACCAATAGATCCAACAATACCAGATGGTTTACATGTTGTTGATTGGGTGAGACAGAAAAGAGGTCTTGAAGTACTTGATCCTACCTTACTTTCAAGACCGGAATCGGAAATAGAAGAAATGATCCAAGCATTGGGAATAGCCCTATTGTGTGTAAATTCATCTCCTGATGAAAGACCAACAATGAGAGATATAGCAGCAATGCTCAAAGAGATAAAACATGAAAGAGAAGAATATGCAAAATTTGATGTGCTTTTAAAAGGGTCTACTGCAATTGATGCTAAAGTTCTTGCAACATCTTCTAATGCATCAGCTATGCAAAGTTTGAATACAAAAAGCAATAATACAAGCTTCTCTGTGTCTTCACTTCTTCATTCATCTTCAAGTTCCAAATTGAGTTTCAAATGA 3396 0.3719 MFSLFSMLNLSSSSSSPYSFFCIIILIQTTLLFTFSSSNNEAKILFTWLHSSSSQPPSSFSNWNIHDTNPCKWTSITCSSLSFVTEINIQSIPLQLPIPSNLSSFPYLNKLVISDTNLTGTIPFDIGDCSSLTVIDLSFNNLVGSIPSSIGKLENLVNLSLNSNQLTGKIPDEISTCISLRNLHLFDNQLDGSIPNSLGKLSKLEVLRAGGNKDIIGKIPEEIGECSNLTVLGLADTRISGSLPVSFGKLQKLKTLSIYTTMLSGEIPKELGNCSELIDLFLYENSLSGSIPSEIGKLKKLEQLFLWQNGLVGAIPNEIGNCSSLRNIDLSLNSLSGTIPLSLGGLFELEEFMISDNNVSGSIPSTLSNAEKLQQLQVDTNQLSGLIPSEIGKLSNLLVFFAWQNQLEGSIPSSLGNCSKLQALDLSRNSLTGSIPSGLFQLQNLTKLLLISNDISGSIPSEIGSCMSLIRLRLGNNRITGSIPKTIGSLKNLNFLDLSGNRLSGPVPDEIRSCIQLQMIDFSTNNLEGSLPNSLSSLSSLQVLDVSFNKFSGPLPASLGRLVSLSKLILGNNLFSGPIPASVSLCSNLQLLDLSSNQLTGSIPAELGQIEALEIALNLSCNLLSGTIPPQISALNKLSILDISHNQLEGDLQTLAELDNLVSLNVSYNKFTGYLPDNNLFRQLTLKDLTGNQGLCTSGQDLCFVKDSSKTDMALNEHEIRKSRRIKLAIGLLIALTVVMILMGITAVVKARRTIRDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLIDRNIIGKGCSGVVYRGEMDNGEFIAVKKLWPITTDEGEALKDYKSGVRDSFSAEVKCLGSIRHKNIVRFLGCCWNKKTRLLIFDYMPNGSLSSVLHERTGNSLDWELRFRILLGSAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDVGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPTLLSRPESEIEEMIQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSTAIDAKVLATSSNASAMQSLNTKSNNTSFSVSSLLHSSSSSKLSFK 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02960 1131 SMART LRR_typ_2 418 442 IPR003591 -
Trre9g02960 1131 SMART LRR_typ_2 153 177 IPR003591 -
Trre9g02960 1131 SMART LRR_typ_2 490 514 IPR003591 -
Trre9g02960 1131 SMART LRR_typ_2 658 683 IPR003591 -
Trre9g02960 1131 SMART LRR_typ_2 586 610 IPR003591 -
Trre9g02960 1131 SMART LRR_typ_2 298 322 IPR003591 -
Trre9g02960 1131 SMART LRR_typ_2 538 562 IPR003591 -
Trre9g02960 1131 SMART LRR_sd22_2 298 330 - -
Trre9g02960 1131 SMART LRR_sd22_2 153 176 - -
Trre9g02960 1131 SMART LRR_sd22_2 586 607 - -
Trre9g02960 1131 SMART LRR_sd22_2 490 505 - -
Trre9g02960 1131 SMART LRR_sd22_2 635 660 - -
Trre9g02960 1131 SUPERFAMILY L domain-like 381 702 - -
Trre9g02960 1131 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524
Trre9g02960 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672|GO:0006468
Trre9g02960 1131 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 311 1065 - -
Trre9g02960 1131 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 213 436 - -
Trre9g02960 1131 SUPERFAMILY Protein kinase-like (PK-like) 765 1066 IPR011009 -
Trre9g02960 1131 Gene3D Phosphorylase Kinase; domain 1 774 873 - -
Trre9g02960 1131 Gene3D Transferase(Phosphotransferase) domain 1 874 1085 - -
Trre9g02960 1131 Gene3D Ribonuclease Inhibitor 152 232 IPR032675 -
Trre9g02960 1131 Pfam Protein tyrosine and serine/threonine kinase 791 1064 IPR001245 GO:0004672|GO:0006468
Trre9g02960 1131 ProSiteProfiles Leucine-rich repeat profile. 637 659 IPR001611 GO:0005515
Trre9g02960 1131 ProSiteProfiles Protein kinase domain profile. 787 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02960 1131 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Trre9g02960 1131 PRINTS Leucine-rich repeat signature 490 503 - -
Trre9g02960 1131 PRINTS Leucine-rich repeat signature 421 434 - -
Trre9g02960 1131 Gene3D Ribonuclease Inhibitor 434 529 IPR032675 -
Trre9g02960 1131 Gene3D Ribonuclease Inhibitor 338 433 IPR032675 -
Trre9g02960 1131 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 874 1083 - -
Trre9g02960 1131 Gene3D Ribonuclease Inhibitor 234 337 IPR032675 -
Trre9g02960 1131 FunFam Nuclear pore complex protein NUP107 38 195 - -
Trre9g02960 1131 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 437 531 - -
Trre9g02960 1131 Gene3D Ribonuclease Inhibitor 40 151 IPR032675 -
Trre9g02960 1131 Gene3D Ribonuclease Inhibitor 530 615 IPR032675 -
Trre9g02960 1131 Gene3D Ribonuclease Inhibitor 616 703 IPR032675 -
Trre9g02960 1131 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 770 873 - -
Trre9g02960 1131 SMART serkin_6 787 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02960 1131 SUPERFAMILY RNI-like 111 504 - -
Trre9g02960 1131 FunFam Putative LRR receptor-like serine/threonine-protein kinase 616 701 - -
Trre9g02960 1131 FunFam LRR receptor-like serine/threonine-protein kinase 536 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02960 Trre-Chr9 37490700 37494428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02960 59 1084 Receptor kinase-like Gene Family AT5G56040 49.376 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g02960 PK_Tyr_Ser-Thr 6.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02960 - - gmx:100818541 1718.75