Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02958 ATGTCAAGCACCTCACAGGTTATTACATGCAAAGCTGCAATATGTTGGGGGGCAGGAAAACCAGTGACAGTGGAAGAGATACAAGTAGATCCACCAAAGGAAAATGAAGTTCGAGTTAAGATGCTTTGTGCTAGTCTCTGCCACACAGACATCTCAAGCATTCAAGGATTTCCTCATAATCAATTCCCCCTAGCACTTGGACATGAAGGAGTTGGTGTTATAGAGAGTGTTGGTGATGAAGTAACAAATCTGAAAGAAGGGGATATTATAATTCCAACATATGTAGGGGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGGAAAACAAATCTTTGTCTTAAATACCCAGTGAGATTCACTGGCCTAATGCCTGATAATACTTCAAGGTTGTCCATTCAAGGCCAGAAACTATATCATGTTTTGAGTTGTCCTACATGGTCAGAATATGTGGTTGTTGATGTTAACTACCTCCTCAAAGTTGATCCAGCCATTAATTTAGCTTATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTTATGGTGCTGCTTGGAAGGAAGCCAAGTCCAATGGACCAAATCAAGTTTATTATCCAACCGTTAAAAGTGGCTCAAGTGTTGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGAGCCAAAATGATGGGAGCAAGTAAGATAATTGGGGTTGACAAAAATGAGATGAAGAAAGAAAAAGGAGAAGCTTTTGGACTAACACACTTTATAAATCCAAGTGATTCTAATAAATCTGCTTCAGAATTGGTCAAAGAATTGAGTGGTGGAATGGGTGTGGATTACTCTTTTGAGTGCACTGGAGTTCCTTCTTTACTCAATGCATCAGTTGAAGTCACAAAATTTGGAACAGGTAAAACAATAGCTATTGGTACAGGAGTTGAAAATATAGTACCATTTGATCTTATTGCCATTATATTTGGTAGAACATTGAAAGGTTCTGTTTTTGGAGGAGTAAAAACCACATCAGACCTTTCCATCATAGCTGAAAAATGTCAGAAAGAGGAATTCCCTCTTCAAGAACTGTTCACCCATGAGGTACCATTGATAGATATAAACAATGCATTTGAGTTATTGAAGCAACCTAATTGTGTCAAAGTTATCATCAAGATGATGTGA 1161 0.385 MSSTSQVITCKAAICWGAGKPVTVEEIQVDPPKENEVRVKMLCASLCHTDISSIQGFPHNQFPLALGHEGVGVIESVGDEVTNLKEGDIIIPTYVGECQECENCVSGKTNLCLKYPVRFTGLMPDNTSRLSIQGQKLYHVLSCPTWSEYVVVDVNYLLKVDPAINLAYASFISCGFSTGYGAAWKEAKSNGPNQVYYPTVKSGSSVAVFGLGAVGLGAISGAKMMGASKIIGVDKNEMKKEKGEAFGLTHFINPSDSNKSASELVKELSGGMGVDYSFECTGVPSLLNASVEVTKFGTGKTIAIGTGVENIVPFDLIAIIFGRTLKGSVFGGVKTTSDLSIIAEKCQKEEFPLQELFTHEVPLIDINNAFELLKQPNCVKVIIKMM 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02958 386 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 328 - -
Trre9g02958 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 346 IPR036291 -
Trre9g02958 386 Gene3D - 14 380 - -
Trre9g02958 386 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Trre9g02958 386 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Trre9g02958 386 PANTHER ALCOHOL DEHYDROGENASE 6 377 - -
Trre9g02958 386 SMART PKS_ER_names_mod 17 383 IPR020843 GO:0016491
Trre9g02958 386 SUPERFAMILY GroES-like 4 187 IPR011032 -
Trre9g02958 386 Gene3D - 179 328 - -
Trre9g02958 386 Pfam Zinc-binding dehydrogenase 213 333 IPR013149 -
Trre9g02958 386 CDD liver_alcohol_DH_like 8 384 - -
Trre9g02958 386 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02958 Trre-Chr9 37454524 37460641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02958 34 377 Monolignol Biosynthesis Gene Families AT2G21730 28.249 1.37e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02958 K00121 - gmx:100798341 614.379