Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02957 ATGTCAAGCACCTCACAGGTTATTACATGCAAAGCTGCAATATGTTGGGGGGCAGGAAAACCAGTGACAGTGGAAGAGATACAAGTAGATCCACCAAAGGAAAATGAAGTTCGAGTTAAGATGCTTTGTGCTAGTCTCTGCCACACAGACATCTCAAGCATTCAAGGATTTCCTCATAATCAATTCCCCCTAGCACTTGGACATGAAGGAGTTGGTGTTATAGAGAGTGTTGGTGATGAAGTAACAAATCTGAAAGAAGGGGATATTATAATTCCAACATATGTAGGGGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGGAAAACAAATCTTTGTCTTAAATACCCAGTGAGATTCACTGGCCTAATGCCTGATAATACTTCAAGGTTGTCCATTCAAGGCCAGAAACTATATCATGTTTTGAGTTGTCCTACATGGTCAGAATATGTGGTTGTTGATGTTAACTACCTCCTCAAAGTTGATCCAGCCATTAATTTAGCTTATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTTATGGTGCTGCTTGGAAGGAAGCCAAGGTTAATGTTGGAAAAGGAGAAGGTTATGGTGAGTCCAATGGACCAAATCAAGTTTATTATCCAACCGTTAAAAGTGGCTCAAGTGTTGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGAGCCAAAATGATGGGAGCAAGTAAGATAATTGGGGTTGACAAAAATGAGATGAAGAAAGAAAAAGGAGAAGCTTTTGGACTAACACACTTTATAAATCCAAGTGATTCTAATAAATCTGCTTCAGAATTGGTCAAAGAATTGAGTGGTGGAATGGGTGTGGATTACTCTTTTGAGTGCACTGGAGTTCCTTCTTTACTCAATGCATCAGTTGAAGTCACAAAATTTGGAACAGGTAAAACAATAGCTATTGGTACAGGAGTTGAAAATATAGTACCATTTGATCTTATTGCCATTATATTTGGTAGAACATTGAAAGGTTCTGTTTTTGGAGGAGTAAAAACCACATCAGACCTTTCCATCATAGCTGAAAAATGTCAGAAAGAGGAATTCCCTCTTCAAGAACTGTTCACCCATGAGGTACCATTGATAGATATAAACAATGCATTTGAGTTATTGAAGCAACCTAATTGTGTCAAAGTTATCATCAAGATGATGTGA 1194 0.3853 MSSTSQVITCKAAICWGAGKPVTVEEIQVDPPKENEVRVKMLCASLCHTDISSIQGFPHNQFPLALGHEGVGVIESVGDEVTNLKEGDIIIPTYVGECQECENCVSGKTNLCLKYPVRFTGLMPDNTSRLSIQGQKLYHVLSCPTWSEYVVVDVNYLLKVDPAINLAYASFISCGFSTGYGAAWKEAKVNVGKGEGYGESNGPNQVYYPTVKSGSSVAVFGLGAVGLGAISGAKMMGASKIIGVDKNEMKKEKGEAFGLTHFINPSDSNKSASELVKELSGGMGVDYSFECTGVPSLLNASVEVTKFGTGKTIAIGTGVENIVPFDLIAIIFGRTLKGSVFGGVKTTSDLSIIAEKCQKEEFPLQELFTHEVPLIDINNAFELLKQPNCVKVIIKMM 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02957 397 Gene3D - 211 339 - -
Trre9g02957 397 FunFam S-(hydroxymethyl)glutathione dehydrogenase 204 339 - -
Trre9g02957 397 SUPERFAMILY GroES-like 4 192 IPR011032 -
Trre9g02957 397 Pfam Zinc-binding dehydrogenase 224 344 IPR013149 -
Trre9g02957 397 Gene3D - 13 178 - -
Trre9g02957 397 PANTHER ALCOHOL DEHYDROGENASE 6 388 - -
Trre9g02957 397 CDD liver_alcohol_DH_like 8 395 - -
Trre9g02957 397 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Trre9g02957 397 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Trre9g02957 397 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 209 357 IPR036291 -
Trre9g02957 397 Gene3D - 340 391 - -
Trre9g02957 397 Gene3D - 179 192 - -
Trre9g02957 397 SMART PKS_ER_names_mod 17 394 IPR020843 GO:0016491
Trre9g02957 397 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02957 Trre-Chr9 37454524 37460641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02957 34 388 Monolignol Biosynthesis Gene Families AT2G21730 27.397 4.28e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02957 K00121 - gmx:100798341 611.683