Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02928 ATGGAACGGAGCTCTTTCTCTCCGCGAAATCGGAATTCCCGACCCAAGTCCGATATCTACTCTACTTTCGTAATTCACGACGATGATGACGACGAAACTAACCTCCGCCGGAAAGCCGGCAGCGCTGAAGCTCAGGAAGATCCATACGGGACAATGGTCTTCAAAGACAACGGCAACGATGACGACGATGATGAAGATTCCTTTCTCCCTCCGCTTCTCAAGCGTCTCCCCAAGGATTTCGGTGGCGGAGCGTCAATGGACTACGACGATGAGGATGATGATGAATCTGGCGATTTTGGCACGATGATTGTGAAAAGTGATCGGAGCCGGCAGCGAGATTGGTCTTCTTCCGGTTTGACCTCACCGGTAGGCTCGACCTGGAAGACTGGGAGTTATTCTCAGGCGAATCCTTTGAATGGCGAGGATGATGATGAGGATGACGACGGTGGTGGATTTTCAACTTTTGTTATGCGTTCTACGGTGAAGTCTGGTGAGAGAGAGTCTGTAAGCGGAACTATGGTGCGACGGACAGGCGGTAATGATGGTGGTGGTGGTGGTTCTACGATGGAGAGGGCGATTGCGAGTATGCAAGGTGTGGGAGAGTTTGGATTAGGGAAACAGAGGAAAGGAAGTGGATCTTCACAGAATGATGAAGGAAAGCAACATTCGGTAACTACCAAGGTTTCGACGAGTTCGATCCCTGATAGTGTTATCAGAGAGGATCCTACCACCAAGTATGAATTACTCAATGAACTTGGGAAGGGTTCTTATGGTGCTGTTTACAAAGCCAGGGATTATAGAACCTCTGAGATGGTTGCTATCAAAGTCATATCATTATCTGAAGGAGAGGAGGGATATGAGGAAATTCGTGGTGAGATTGAGATGTTACAACAGTGTAATCATCCTAACGTTGTCCGTTATCTTGGAAGCTATCAAGGAGAAGAGTATCTTTGGATAGTGATGGAATACTGTGGTGGTGGTAGTGTTGCTGATCTTATGAACGTGACTGATGAAGCACTGGATGAGGGTCAAATAGCATATATCTGTAGAGAAGCGTTGAAGGGACTTGATTATTTACACTCAATTTTTAAAGTCCACAGAGACATCAAAGGCGGGAATATCTTATTAACTGAACAAGGAGATGTCAAGCTAGGGGATTTTGGTGTTGCTGCGCAGCTTACAAGGACTATGTCAAAGCGCAATACGTTTATTGGAACCCCTCATTGGATGGCTCCGGAAGTCATTCAGGAAAGTCGCTATGACGGAAAGGTAGATGTCTGGGCTCTTGGTGTGTCTGCAATTGAAATGGCCGAGGGTGTTCCTCCAAGATCGTCAGTACATCCGATGAGGGTTTTATTCATGATATCCATTGAACCAGCTCCAATGCTCGAGGATAAAGAAAAATGGTCTTTATATTTCCACGATTTTGTTGCAAAATGCCTGACCAAAGAACCTCGTCTCCGCCCTGCTGCATCTGAGATGTTGAAGCACAAATTTTTTGAAAAATGGAAAGTTGGATCCGCTGCAATGTTTCCAAAACTAGAAAAGGCAAGGCAAGTCAGGGCTTCAATGGCTTTACAGGTGCAAACTCTTGCTCCAGCTTCAGCGGGAGAACAGGAGCCAATGATAGCTTCCATACTAAATGACGAATATGGAGATACTGTTCCATCCAGACCTCAGAACATAAGTGTTGAGGAGGCAGCTTATATCTCATCACATGGAACTATGAGGAAGCTGCAAAAGGTGGATGAGGTTGACAATAGTGAAGGTGACTTTGGCACAATGATAGTCCACCGGGACGAATTGTTTAAGACCACACAGGATACAGACTCTGCTAGTTATAAAACTGCCTTCACCAGCAGCACAGGAGGCAGATTATCTGACCCTGGGGTTGAGAGTCTAAAAGTTGGCGACTTGAACACTGCCTCTTTTAGAGGATCTGGTTCTACTTCAGATACCATACAATCATCTTTACCATCTGTTAGTAATTCAACAGAGCAGAACCTCAAAACAAGAGGCACTCATCGAGCACAAGCTGGAATTAGTAGTGATATAAGGAATAGTACGCTTAAGAATGAAACAGTCAGCCGCAAATTTGCTTTACAAGATAAGCTTTGGTCCATTTATGCCGCTGGTAATACAGTGCCCATACCATTCTTAAGGGCAACAGATATATCACCTATTGCCCTCCTTTCAGAAAATGTGTTTGGTGGCATGCAACCGGATACAGGTGGAACTGGAACAGTAGAAGCATTGCAAGAACTTTTTAGTGGCGACGGCCAGTCCAAAAAGGGTCGCAGAGGAATAAATGAGATGCCCCTTCCTCCAAGCATTTGCCAAAGATTGACGTCTAGTTCTACTCTAATGAATTTGGCACAGGCTTTAGCTTATCATAAGATGTGTTACGAAGATATGCCACTGCAGGAGTTGCAAGCAACACAGGAGCAGCGAACTATTCAAAATCTCTCTGACACACTTAGAACCATTCTTCGGTTGTAG 2499 0.4526 MERSSFSPRNRNSRPKSDIYSTFVIHDDDDDETNLRRKAGSAEAQEDPYGTMVFKDNGNDDDDDEDSFLPPLLKRLPKDFGGGASMDYDDEDDDESGDFGTMIVKSDRSRQRDWSSSGLTSPVGSTWKTGSYSQANPLNGEDDDEDDDGGGFSTFVMRSTVKSGERESVSGTMVRRTGGNDGGGGGSTMERAIASMQGVGEFGLGKQRKGSGSSQNDEGKQHSVTTKVSTSSIPDSVIREDPTTKYELLNELGKGSYGAVYKARDYRTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCNHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTDEALDEGQIAYICREALKGLDYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGVPPRSSVHPMRVLFMISIEPAPMLEDKEKWSLYFHDFVAKCLTKEPRLRPAASEMLKHKFFEKWKVGSAAMFPKLEKARQVRASMALQVQTLAPASAGEQEPMIASILNDEYGDTVPSRPQNISVEEAAYISSHGTMRKLQKVDEVDNSEGDFGTMIVHRDELFKTTQDTDSASYKTAFTSSTGGRLSDPGVESLKVGDLNTASFRGSGSTSDTIQSSLPSVSNSTEQNLKTRGTHRAQAGISSDIRNSTLKNETVSRKFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSENVFGGMQPDTGGTGTVEALQELFSGDGQSKKGRRGINEMPLPPSICQRLTSSSTLMNLAQALAYHKMCYEDMPLQELQATQEQRTIQNLSDTLRTILRL 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02928 832 SUPERFAMILY Protein kinase-like (PK-like) 243 501 IPR011009 -
Trre9g02928 832 MobiDBLite consensus disorder prediction 208 238 - -
Trre9g02928 832 FunFam serine/threonine-protein kinase dst1 isoform X1 243 534 - -
Trre9g02928 832 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 228 604 - -
Trre9g02928 832 MobiDBLite consensus disorder prediction 1 189 - -
Trre9g02928 832 ProSitePatterns Protein kinases ATP-binding region signature. 252 275 IPR017441 GO:0005524
Trre9g02928 832 MobiDBLite consensus disorder prediction 98 112 - -
Trre9g02928 832 CDD STKc_MAP4K3_like 245 500 - -
Trre9g02928 832 MobiDBLite consensus disorder prediction 113 138 - -
Trre9g02928 832 FunFam Aurora kinase A 239 327 - -
Trre9g02928 832 MobiDBLite consensus disorder prediction 21 43 - -
Trre9g02928 832 Pfam Protein kinase domain 246 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02928 832 MobiDBLite consensus disorder prediction 645 685 - -
Trre9g02928 832 ProSiteProfiles Protein kinase domain profile. 246 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02928 832 Gene3D Transferase(Phosphotransferase) domain 1 242 531 - -
Trre9g02928 832 MobiDBLite consensus disorder prediction 202 239 - -
Trre9g02928 832 SMART serkin_6 246 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02928 Trre-Chr9 37138419 37155542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02928 7 832 MAP Kinase Kinase Kinase Kinase AT1G69220 59.627 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Trre9g02928 Pkinase 2.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02928 - - gmx:100804995 1286.17