Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02909 ATGGCGATGATGCAAGGAGTCCAAAAGAACACTCTATACGTCGGAGGTTTAGCGGAAGAGGTAAACGAATCCATTCTTCACGCGGCTTTTATACCTTTCGGAGACATTAAGGATGTCAAGACTCCTCTTGACCAAGCCACTCAGAAACACCGCTCCTTCGGTTTCGTCACTTTCCTTGAAAGAGAAGATGCTTCCGCCGCCATGGATAATATGGACGGTGCTGAACTCTATGGTCGTGTCCTTACTGTTAATTACGCTCTTCCTGAGAAAATTAAGGGTGGTGAACAGGGCTGGGCTGCTCAACCAATTTGGGCGGATGCGGATACTTGGTTTGAGAGGCAGCAACAAGAGGAGGACATGCGTCGTCTTGAAGCAGAGAATAAAGCTGCAATGCTGGCTGCTGAAGAACTGCATAGGAAGCAAGTAGCCGAAGAGCGAGAAGGAGAGAAAGAGGAGATTGAGATCAAGGATGATCCTATGGCAAGGGCTGAAGCAGAGGCTGTTGGAAATTGA 513 0.4834 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEDMRRLEAENKAAMLAAEELHRKQVAEEREGEKEEIEIKDDPMARAEAEAVGN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02909 170 MobiDBLite consensus disorder prediction 140 170 - -
Trre9g02909 170 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Trre9g02909 170 PANTHER ATPASE E1 2 169 - -
Trre9g02909 170 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Trre9g02909 170 Gene3D - 3 156 IPR012677 -
Trre9g02909 170 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Trre9g02909 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Trre9g02909 170 SMART rrm1_1 11 84 IPR000504 GO:0003723
Trre9g02909 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Trre9g02909 170 MobiDBLite consensus disorder prediction 140 163 - -
Trre9g02909 170 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02909 Trre-Chr9 36904499 36907573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02909 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.26e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02909 - - gmx:100809447 305.834