Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02907 ATGGCCAAAAAACTTTTGAACTTGAATGTTCGATATAGAAGAAGAAGACCATTCTCCTCGTCGAATGAAACTCCATCTCTTTACTCATTCCTTCAACCTTGTTTGTTTTCCATCAACAACAACAACAAATCTCATGATGATGATCTCCCAACTTCACCACCGCATTCACTCTCTCTCACACCCCACCAACTTACCACTCTTCAAACTACACTCCACAAATCCCTCATCACTACTCAAACCGATGAAGCTTGGAAATCCTTCAAAACCCTTACTGCCCACCATTCCTTCCCACCTAAACCCCTCACCAATTCCCTCCTCACCCACTTATCCTCCCTTGGTGACATTCACAATCTCAAAAGAGCTTTTGCATCTACCATCTTTATCATTCAAAACAATCCCAACCTTCTCGATTTCAATACAATCCATACCATGCTTCTTTCCATGAAGTCTGCCAACACTGCTTCCCCTGCTTTTGCACTTGTTAGGACTATCTTCAAAAACAGATTTTTTATCCCTTTTCATTCATGGGGCGCCGTGCTCGTTGATATTGCTAGGAACAATCATAACCTTGCTGCTTTCTTGCCTCTTTTTGAAGAGAATTGCCGGGTTGCTTTCGATGAGAAGATCCATTTTATGATGCCTGATGTTTCTGCTTGTAATGCTGCTCTTGAAGCTTGCTGTGTTCACCTTGAATCAGTAACCGATGCTGAGCGAATTGTAGGAATAATGTCAAAGCTTGGTGTTAAGCCTGATGAGTTTAGTTTTGGATTTCTTGCTTATTTATATGCACTTAAAGGGTTACAAGATAAGATAGAGGAGTTAAAAGTTTTGATGACTGGTTTTGGTTACTCGAAAAACAATAAATGCTTTTATTCTAATTTGATTAGTGGGTATGCTAAGTCTGGTAATTTAGCTTTTGTCGAGTCGACTATTATCAGTAGTCTGAGTGATAGAGATGGGGAGGTAGTTTGGAATTTTAATAGAGATACTTTTTGTTTAGTAGTTAAGGAATATCTTCAGAAGGGGAATATTAAGGGTTTAGCAAATTTGATTATTGAAGCTCAGAAATTAGAGTCTTCGAATATCAAAGTTGATGAGTCTATAGGTTTTGGTATTGTTAATGCATGTGTTAGTATTGGACTGTCAGACAAAGCACACAGTATTCTTGATGAAATGAATGCTTTGGGAGGCTCTGTGGGTCTTGGGGTCTATGTACCCATCTTGAAGGCTTACTGCAAAGAAAATCGAACTGCTGAGGCTACTCTATTGGTCATGGAGATTAGTAGTTCAGGTCTTCAGTTGGATGCGGAAACCTATGATGCTCTGATAGAGACGTCCATGTCCGGTCAAGATTTTCAGTCTGTTTTTTCTCTGTTTAGGGACATGAGAGAGGCCAGGGTTCTTGATTTGAAAGGGAGTTACTTGACTATAATGACAGGTTTGATGGAGAATAATCGACCTGAATTGATGGCAGCTTTCTTAGATGAAGTGGCTGAGGATCCTCGTATTGAAGTTGGTACTCACGATTGGAATTCTATAATCCACGCTTTTTGTAAAGCTGGGAGATTAGAAGATGCGCGGAGGACTTTCAGAAGGATGACATTCCTGCAATTTGAGCCAAATGATCAGACATACTTGTCACTGATTAATGGATATGTTTCAGCACAAAAATATTTTGATGTAATGATGTTGTGGAATGAGGTTAAGCGCAAGTTATCGGTGGATGGGCCGAAGCGGATCAAATTTGACCAAAATCTGGTTGATGCATTCCTGTATGCTATGGTCAAAGGAGGTTTCTTTGATGCTGTGATGCAAGTCGTAGAGAAATCTAAAGAGATGAAAATATTTGTTGATAAGTGGAGATACAAACAAGCATTCATGGAGACCCATAAGAAGCTCAAAGTGGCCAGCAGAAGTTTGGACTTGCGGGTCTGTGTACAATTGGAGAGTATGCAGTATTGTTTGTCGCATGGTGATGTCATGAGTGTTCTAAGTGTGTTTTATCTTGGAAAAGAAGTTGGGCTGGAGGCTACAACTAAAAGTGAGTAG 2049 0.4002 MAKKLLNLNVRYRRRRPFSSSNETPSLYSFLQPCLFSINNNNKSHDDDLPTSPPHSLSLTPHQLTTLQTTLHKSLITTQTDEAWKSFKTLTAHHSFPPKPLTNSLLTHLSSLGDIHNLKRAFASTIFIIQNNPNLLDFNTIHTMLLSMKSANTASPAFALVRTIFKNRFFIPFHSWGAVLVDIARNNHNLAAFLPLFEENCRVAFDEKIHFMMPDVSACNAALEACCVHLESVTDAERIVGIMSKLGVKPDEFSFGFLAYLYALKGLQDKIEELKVLMTGFGYSKNNKCFYSNLISGYAKSGNLAFVESTIISSLSDRDGEVVWNFNRDTFCLVVKEYLQKGNIKGLANLIIEAQKLESSNIKVDESIGFGIVNACVSIGLSDKAHSILDEMNALGGSVGLGVYVPILKAYCKENRTAEATLLVMEISSSGLQLDAETYDALIETSMSGQDFQSVFSLFRDMREARVLDLKGSYLTIMTGLMENNRPELMAAFLDEVAEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSLINGYVSAQKYFDVMMLWNEVKRKLSVDGPKRIKFDQNLVDAFLYAMVKGGFFDAVMQVVEKSKEMKIFVDKWRYKQAFMETHKKLKVASRSLDLRVCVQLESMQYCLSHGDVMSVLSVFYLGKEVGLEATTKSE 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02907 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 250 IPR002885 -
Trre9g02907 682 Pfam PPR repeat 291 304 IPR002885 -
Trre9g02907 682 Pfam Pentacotripeptide-repeat region of PRORP 354 471 IPR033443 -
Trre9g02907 682 Pfam PPR repeat family 510 553 IPR002885 -
Trre9g02907 682 PANTHER BNAC05G43320D PROTEIN 3 649 - -
Trre9g02907 682 NCBIfam pentatricopeptide repeat 510 541 IPR002885 -
Trre9g02907 682 Gene3D Tetratricopeptide repeat domain 330 466 IPR011990 GO:0005515
Trre9g02907 682 Gene3D Tetratricopeptide repeat domain 467 631 IPR011990 GO:0005515
Trre9g02907 682 Gene3D Tetratricopeptide repeat domain 62 317 IPR011990 GO:0005515
Trre9g02907 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02907 Trre-Chr9 36893743 36896951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02907 383 571 Miscellaneous Gene Families AT4G11690 23.280 1.94e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02907 - - mtr:11424790 1047.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02907 9 36893743 36896951 Trre9g02907 9 36893743 36896951 ECH