Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02882 ATGGATTTACTGGGAAAGATGAGTTTTGATGATATCCTTTATGTTGATTCTCAAAAAGAACACGGTGTGTATGAAGTTAGGGTTCTAAGAATGTGGAAAGTTGCTGATTTATCCTCTTCTGGAAATTTTAGTGCAATAGAAATGGTGCTCATTGACAAGAATGGACATAAAATTCAAGCTACGATTCCTAAGAATGTGATGAGCGCTTTTGTTGATCAAGTTGTTGAGGGGAGGGTTTATCGTATATCATCTTTGACTGTGAGGTTTAACTTTGGTAGTTTACTACCAAGCTATCATAGGTACAGGTTTGTGTTCAATGAAAATACTGTTGTTGAGTCATCCCCTAATTGTTTCATACCCATATATGGATTGTCACGGATTGGACCTGAAAGTGTTCATAAGAAGAGGGGTTGTGAGTTTGCCTATATGATAGATGTCATTGGTGTAGTCACTTCTGTTGTGCATGATAAGAACTTTTTCCCTGATGGAAAGGTTACTCAAACTGTTTCTTTCAGACTCAATCATGAGAGGAAATCTTTTGCCTGTGAGTTGTCCGGTGATCTTGTTGAAAAATTTCGTGGTCTTTTAAGCTCTTCTCCCAGTGGGTTGCCTATTGTAGTGTTGCAATTTGCTAAGCTTGCTCGATCCCAAGGTGCTAGCTTGGTTCAGAGCATTGAAGGTGTTACCAGGATATTTGCTGATATCTCAATTGATGAGGTTATGAATTTTAGGCAATGCATGGTACAATATCTCACTAAGGAAATTGATTTTAAGGGTCTTTTTCGTACATCTCGCCGTATACCGATGTGCGAAACTTTGGATTTCATGCATGATTACCCTGTTAGAACCATTGATGAACTGAAAAACAATCCTCAGTTGGGTGTGTTCATCGTGAATGCGAGGATATGTGAGATAACTAGCTTCGATCCATGGTGGTATCCACTTTGCAAGTGTAATCAGGTGTTTGACAAGTACATTGGAACTTTCCACTGTGTCAAATGTGGAACATCTAAATTTGTAGCTATCCCTAAGGTCAAATTGAATCTTCAAGTAGATGATATTACTGGTTCTGCATTATTTAGAGCCTTTGATCATGTTATGCTCAGTATTACTGCTGTTGAGTCCTACACTCAGGTGAGATCCATGTTTTGTTGGCATGGACTTGATTTGAATTTCTTCTACAACACATTTAATGCTGTTATAGGAAAGAGCTTAATGTTCATTGTGAAGAAGAATGCACATTATCCTGATTTTATTGAAAATTCTTTTGAGGTCCTTCGCGTTTCTGATCATCAGGCTGTAATGAAACATTTTGCTTGCAAGGGTGTTGTTAACACTCCTGCAAAGGTGAGGTTACAAATAAAATCTTTTATTAGTGTATGA 1383 0.3782 MDLLGKMSFDDILYVDSQKEHGVYEVRVLRMWKVADLSSSGNFSAIEMVLIDKNGHKIQATIPKNVMSAFVDQVVEGRVYRISSLTVRFNFGSLLPSYHRYRFVFNENTVVESSPNCFIPIYGLSRIGPESVHKKRGCEFAYMIDVIGVVTSVVHDKNFFPDGKVTQTVSFRLNHERKSFACELSGDLVEKFRGLLSSSPSGLPIVVLQFAKLARSQGASLVQSIEGVTRIFADISIDEVMNFRQCMVQYLTKEIDFKGLFRTSRRIPMCETLDFMHDYPVRTIDELKNNPQLGVFIVNARICEITSFDPWWYPLCKCNQVFDKYIGTFHCVKCGTSKFVAIPKVKLNLQVDDITGSALFRAFDHVMLSITAVESYTQVRSMFCWHGLDLNFFYNTFNAVIGKSLMFIVKKNAHYPDFIENSFEVLRVSDHQAVMKHFACKGVVNTPAKVRLQIKSFISV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02882 460 SUPERFAMILY Nucleic acid-binding proteins 279 430 IPR012340 -
Trre9g02882 460 SUPERFAMILY Nucleic acid-binding proteins 142 246 IPR012340 -
Trre9g02882 460 Gene3D - 118 253 IPR012340 -
Trre9g02882 460 Gene3D - 9 113 IPR012340 -
Trre9g02882 460 CDD RPA1_DBD_A_like 26 111 - -
Trre9g02882 460 Gene3D - 276 438 IPR012340 -
Trre9g02882 460 Pfam Domain of unknown function DUF223 47 115 IPR003871 -
Trre9g02882 460 SUPERFAMILY Nucleic acid-binding proteins 26 116 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02882 Trre-Chr9 36722628 36724725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02882 28 364 Core DNA Replication Machinery Family AT5G08020 23.035 9.78e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02882 - - tpra:123914763 467.618