Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02877 ATGGCGTCACAAATGGCGATTCTCTATCGCACACGTTCTCTTCTAACAAAATCCACCAACATAACAATCAAATCAATCTCAACATTCCCATTTCTCAATCAAGAACCCGAACTTGCAGAAACTGTTACTCCAATTCCTCCAAATCCTTCATCTCTTCCTCCAAATCCAGCTTCAGGAAGCCCTCTCTACAATGAGAATTGGCGAAACCCTATTACGAAACCTTCATCTTCAAACGCGGTAACACCTTTCGGTCATTTCACGCGCACTTCACTCTCTGATACTTACGATTCCCACGCGCTTCTTAACATTTTCGGTGATTGGATGGCTTCACAACGTTGGCATGATGTGAAGGATTTGTTTGAAGCTTGGGTTAGATCATTGGATAAAAATGGGAAACCTAATAAACCTGATGTTAATTTGTTTAATCATTATCTTAGGGCTAATCTTATGATTGGTGCTTCTGCTGCTGAGTTACTTGATTTGTTAGCTCAGATGGATCATTTTAATGTTTTGCCGAATACCGCGTCGTTTAATTTGGTTCTTAAAGCTATGCATCAAGCTGGGGAGACTCTTGCTGCTGAAAAACTTCTTGAACGGATGCTGCAGTCAGGAAATGAAGCTCTCCCTGATGATGAATCATATGACTTGGTCATTGGAATGCTCTTTTCAACAGATCAGATTGATGCTGCATTCAAATATATAGATTTAACTCTGAAAAATGGCAACGTATTGTCAATGAATTTATTTATGAACTGTGTAAGGAGCTGTGTCAAACGCGGAAGGCTTGATACGTTGGTGGCAATAATTGAAAAGTGCAGGGCAACAGATCAAAACAAAGCCCTTTGCCCCTCCTGGAACCTGTGCAATTTTATAGCTGAAGTTGCAATCAAAGAGGATAATAGCAAGTTAGCCTATTATGCACTGGAGTTTATGGCTCGATGGATTGTAAAGGGTGAACGTGCAAGACCTCAGGTGTTGCTTTCTGTAAATGAAGGTTTAATCGTGTCAGCTTTGTTGACTGCAGGTAGAACCTATAATTCTGAACTGCTGGGAGCAGCATGGGCTGTTTTGGACCGCTCATTGCGTAAAAAGAAGGTTCCAAATCCAGAATCTTATCTTGGAAAGATATATGCCCTTGCATCACTGGGTAATCTACAAAAGGCATTTGGTACTCTCCATGACTATGAGTCTGCTTATGGTGATTCCAATCAAGAAGCTGACGACTTGTTCTGCCCATTTACTTCTTTACATCCATTGGTTGTGGCATGCTCCAAGAAGGGTTTTGAGACTTTGGATACTGTTTATTTTCAACTGGAGAATTTAAGCCGTGCTGAGCCTCCATACAAGTCTGTTGCTGCGCTAAACTGTGTCATTTTAGGATGTGCAAACATATGGGACCTTGATCGAGCTTATCAAACTTTTGAATCAATTGGATCTACTTTTGGGTTGACCCCTGATATTCATTCGTACAATGGCCTGATGTGTGCGTTTGGAAAGCTCAAGAAGACACATGAAGCTTCAAAGGTGTTTGAGCACCTAGTAAGTTTGGGTGTGAAACCTAATGCAAAGTCGTATTCCGTGCTTGTTGATGCCCACCTGATTAACCGTGATGTCAAATCTGCTCTGGCAGTGATTGATGATATGATATCTGCTGGATTTGAACCGATGAGAGGGACACTAAAAAAGGTCAGAAGGCGATGCATACGAGAGTCGGACTATGAAAGCGATCAACGAGTGGAGTCAATCGTTCGATCTTTGAATTACCGTCTAGGTTCAGAAGCTCGACGAAACATGCTGTTTAATCTTGATTACAGTGTGGAAAAGGCTTGA 1830 0.4158 MASQMAILYRTRSLLTKSTNITIKSISTFPFLNQEPELAETVTPIPPNPSSLPPNPASGSPLYNENWRNPITKPSSSNAVTPFGHFTRTSLSDTYDSHALLNIFGDWMASQRWHDVKDLFEAWVRSLDKNGKPNKPDVNLFNHYLRANLMIGASAAELLDLLAQMDHFNVLPNTASFNLVLKAMHQAGETLAAEKLLERMLQSGNEALPDDESYDLVIGMLFSTDQIDAAFKYIDLTLKNGNVLSMNLFMNCVRSCVKRGRLDTLVAIIEKCRATDQNKALCPSWNLCNFIAEVAIKEDNSKLAYYALEFMARWIVKGERARPQVLLSVNEGLIVSALLTAGRTYNSELLGAAWAVLDRSLRKKKVPNPESYLGKIYALASLGNLQKAFGTLHDYESAYGDSNQEADDLFCPFTSLHPLVVACSKKGFETLDTVYFQLENLSRAEPPYKSVAALNCVILGCANIWDLDRAYQTFESIGSTFGLTPDIHSYNGLMCAFGKLKKTHEASKVFEHLVSLGVKPNAKSYSVLVDAHLINRDVKSALAVIDDMISAGFEPMRGTLKKVRRRCIRESDYESDQRVESIVRSLNYRLGSEARRNMLFNLDYSVEKA 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02877 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Trre9g02877 609 Gene3D Tetratricopeptide repeat domain 436 587 IPR011990 GO:0005515
Trre9g02877 609 Pfam PPR repeat 176 204 IPR002885 -
Trre9g02877 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Trre9g02877 609 PANTHER OS07G0599000 PROTEIN 1 607 IPR044605 -
Trre9g02877 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Trre9g02877 609 Gene3D Tetratricopeptide repeat domain 107 318 IPR011990 GO:0005515
Trre9g02877 609 Pfam PPR repeat family 485 531 IPR002885 -
Trre9g02877 609 NCBIfam pentatricopeptide repeat 488 522 IPR002885 -
Trre9g02877 609 NCBIfam pentatricopeptide repeat 524 555 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02877 Trre-Chr9 36667023 36671266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02877 483 575 Glycosyltransferase AT1G05670 25.806 4.37e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02877 - - gmx:100800731 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02877 9 36667023 36671266 Trre9g02877 9 36667023 36671266 ECH