Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre9g02863 | ATGGAAGAGAAGAAGTTTGTTTGTAAGTATTGTAGCAAAAGGTATCCTTGTGGAAAATCTTTAGGTGGTCACATTAGGACTCATATGATGAGTGAAAATTCACTTCAAGCAAAAGAAGAAAAAAGAATCAATGCTAATAATGCTATGTTTAAGTTTGAAGATGGAAGAAAGAGAAAGAGATTGGATTTAGGGTCTAGTGGTAGTGGTAGTGGTGGTGGTGGTGATGATGGAAACCTAATTTATGGTCTTAGAGAGAATCCCAAGAAAACATCAAGGTTTGTGCATTCCAATGTTGCTACTGTTCAAATGGAGAAATTCTGCAAAGAATGTGGAAAAGGTTTTCCATCATTGAAAGCTTTATGTGGTCACATGGCTTGTCACTCTGAGAAAGACAAAGGAACCAATTGGATTGAAAGTGTGTCTGGTGTCAGTGAGAAGCAGAAATTGGTTATGGATAGTCAATCGGATACCGAGGCTTCGGTTCCGACTGATACACGGAGATCGAAAAGAATGAAGTTCAAGAATCTTAACAGCGGTGGCGGCGGTGGTGGTGGTGACAATAGCCATCCGCCTTCTTCGTCTTCGCTTCATTGGGGAAATAATTGTTCTTCTTCGATTTCCGAGGTTGAGCAGGAGCAAGAAGATGTTGCTAGGTGTCTGATGATGTTGTCTAGAGATGCTACTTACAAGGGTCGTTTTGCTTTGGTGACAGAGTCTTCTGATAACAACTCGGTAGTTCTCGAAGGTAAATCGAAATCGCCTTCTGTTGATACCAAGTTTGCTGCTATCAAGAACATTGGTGGTTCTAATAACAATGCTTTTGATTTCGCGGGGAAGAAGCTGAACAAGGACGCGAAATTGAAATCGGTTGAAATTGGTTATGTTTCTGATAATTCTGATTCTGGTTATTTCACATATGGTCCTAGAAAAGTAGAATCAGATGATTCGAGCGACGCGTTTTTCATGAATGATGTTAAGTCTTCAAAAGCTGGACTTATCTCTAGGTTTGAAGATCATGATTTTGATTCAAGGAAGAAGATATTGAGCAGAGAAAAAAGAAGCAGAAATAGTAATGAATTCAAGAAACTAGCTTTGGATGATTCAAGGAAGAAGCCAAATTTAGTTGAAAGTTCTAGCAAGAAGAAAACAAAAAATGGTACTTCTTATAGCAATGATGAAAACTATGAGAGTTTGAAAATTGAAAGAGAGAGTTATTCTGAAGATTCAGCTTATGAAAGTGATGAAAACAGCACTGATAGTGATTCTTATCCTGCTCCACCAAAGACACAAAGCAATAGAAACATAAATTCAAAGACTAAAAAGTTAACAAGCAAAGGAAAGAAGAAATTGAAGTCAAAGAAAAGCAAAGAACATGAGTGTCCAATTTGCAACAAGATTTTTAGATCAGGACAAGCTTTAGGGGGTCACAAAAGGTCCCATTTTGTTGGAGGGAATGATGAAAACACTTTTGTGATTAGACCAGCTAATGGTGGTGGTGCTGTTCAAGCTGCTCCTGCTGCTAATCCTTGCTTAATTGATCTTAATCTACCTGCTCCTGATGATGAATAA | 1569 | 0.3824 | MEEKKFVCKYCSKRYPCGKSLGGHIRTHMMSENSLQAKEEKRINANNAMFKFEDGRKRKRLDLGSSGSGSGGGGDDGNLIYGLRENPKKTSRFVHSNVATVQMEKFCKECGKGFPSLKALCGHMACHSEKDKGTNWIESVSGVSEKQKLVMDSQSDTEASVPTDTRRSKRMKFKNLNSGGGGGGGDNSHPPSSSSLHWGNNCSSSISEVEQEQEDVARCLMMLSRDATYKGRFALVTESSDNNSVVLEGKSKSPSVDTKFAAIKNIGGSNNNAFDFAGKKLNKDAKLKSVEIGYVSDNSDSGYFTYGPRKVESDDSSDAFFMNDVKSSKAGLISRFEDHDFDSRKKILSREKRSRNSNEFKKLALDDSRKKPNLVESSSKKKTKNGTSYSNDENYESLKIERESYSEDSAYESDENSTDSDSYPAPPKTQSNRNINSKTKKLTSKGKKKLKSKKSKEHECPICNKIFRSGQALGGHKRSHFVGGNDENTFVIRPANGGGAVQAAPAANPCLIDLNLPAPDDE | 522 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre9g02863 | 522 | MobiDBLite | consensus disorder prediction | 187 | 204 | - | - | |
| Trre9g02863 | 522 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 105 | 132 | IPR013087 | - | |
| Trre9g02863 | 522 | MobiDBLite | consensus disorder prediction | 359 | 378 | - | - | |
| Trre9g02863 | 522 | SUPERFAMILY | beta-beta-alpha zinc fingers | 106 | 480 | IPR036236 | - | |
| Trre9g02863 | 522 | SUPERFAMILY | beta-beta-alpha zinc fingers | 2 | 30 | IPR036236 | - | |
| Trre9g02863 | 522 | MobiDBLite | consensus disorder prediction | 395 | 409 | - | - | |
| Trre9g02863 | 522 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 458 | 480 | IPR013087 | - | |
| Trre9g02863 | 522 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
| Trre9g02863 | 522 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 522 | - | - | |
| Trre9g02863 | 522 | MobiDBLite | consensus disorder prediction | 147 | 204 | - | - | |
| Trre9g02863 | 522 | MobiDBLite | consensus disorder prediction | 440 | 454 | - | - | |
| Trre9g02863 | 522 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 33 | IPR013087 | - | |
| Trre9g02863 | 522 | MobiDBLite | consensus disorder prediction | 416 | 439 | - | - | |
| Trre9g02863 | 522 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 107 | 127 | IPR013087 | - | |
| Trre9g02863 | 522 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 460 | 480 | IPR013087 | - | |
| Trre9g02863 | 522 | MobiDBLite | consensus disorder prediction | 379 | 394 | - | - | |
| Trre9g02863 | 522 | MobiDBLite | consensus disorder prediction | 147 | 161 | - | - | |
| Trre9g02863 | 522 | SMART | c2h2final6 | 458 | 480 | IPR013087 | - | |
| Trre9g02863 | 522 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
| Trre9g02863 | 522 | SMART | c2h2final6 | 105 | 127 | IPR013087 | - | |
| Trre9g02863 | 522 | Pfam | C2H2-type zinc finger | 107 | 129 | - | - | |
| Trre9g02863 | 522 | Pfam | C2H2-type zinc finger | 458 | 480 | - | - | |
| Trre9g02863 | 522 | Pfam | C2H2-type zinc finger | 6 | 29 | - | - | |
| Trre9g02863 | 522 | MobiDBLite | consensus disorder prediction | 359 | 457 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre9g02863 | Trre-Chr9 | 36503639 | 36505207 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre9g02863 | 1 | 522 | C2H2 Transcription Factor Family | AT1G26610 | 40.335 | 9.83e-91 | 283 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Trre9g02863 | zf-C2H2_6 | 9.9e-06 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre9g02863 | - | - | tpra:123908903 | 863.603 |