Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02825 ATGGACCGACCACCGTGGAATCAAGAAGAACCGACGGTTGACGGTGGCGAAGCCGGGGGACTACCTCCAACACACGCTTTAACTCTGCCGCCACGTACCGATAATTTTTTTAGCGGTGGTTTCAGCCCTGGTCCTATGACTCTACTTTCTAATTTATTGACTGACGGTGAAGATGGTAAGTCCTTCTCTCAGCTTCTCGCCGGTGCCATGGCGTCTCCGGCAGCAGTAACAGCCGGCTTGCTCGATTCACCAGGCTTCTTTTCACATCCTCAGGTGTCTTTTGGAATGTTACACCAGCCGCCGCAGGCACTGGCACAGGTCTCGGCTCAAGAAGGACAATCCAACACAAATATGAATAACCAAGCTGGACATTCATTGGCTGTATCAGCATCCACCGATCACGCTCCTCTCTCGGAACAAAGGTTGCAGTCTTCTTCGTTGAATGTTGATAAGCCTGCTGATGATGGTTACAATTGGAGGAAGTATGGACAGAAACACGTGAAAGGTAGCGAGTTTCCTCGAAGTTATTATAAATGCACACATCCTAACTGTCCTGTCAAGAAAAAGGTTGAGCGCTCGCTTGCTGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACAATCATCAACGTCCGAGTAACAAGCGATCAAAAGATACTATAACTTCAAATGACAGTTCAAATATCCAAGGGAATGCTGATTCGTCTTATCAACAGATGATGGATCCGGAATCTAGTCAGGCAACAGGTGAACATGTATCCGGAACAAGCGACAGTGAGGAAATTGGTGATCGTGGAACTGAAGCGGATGAAAAAAGACTCGAGCCTGACCCCAAAAGGAGAAATACAGAAATCGTGGTCGCTGATCCTGCAGCTTCTTCACATAGGACTATGGCGGAGCCTAGAATCATCGTGCAAACAACTAGTGAGGTTGATCTCTTAGACGATGGTTATCGATGGCGAAAATATGGACAAAAAGTTGTCAAAGGCAACCCTTATCCAAGGAGCTATTACAAATGTACAACACAAGGTTGTAATGTTCGAAAGCACGTAGAGAGGGCATCAACGGATCCTAAAGCAGTTATAACAACATACGAAGGAAAACATAATCATGATGTGCCAGCAGCTAAGACTAACAGTCACACTATCGCCAACAATAACGCTTCACAGTTTAAATCGCAAAATAACATCTCTGAGAAGCCTAACTTTGGCAGCATTGGTAATGGCGGCAGTAGTGAGCAACAACCAGTTGCGCGTCTAAGGCTGAAGGAAGAGCGGATAACTTAA 1287 0.4584 MDRPPWNQEEPTVDGGEAGGLPPTHALTLPPRTDNFFSGGFSPGPMTLLSNLLTDGEDGKSFSQLLAGAMASPAAVTAGLLDSPGFFSHPQVSFGMLHQPPQALAQVSAQEGQSNTNMNNQAGHSLAVSASTDHAPLSEQRLQSSSLNVDKPADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLAGHVTAIIYKGEHNHQRPSNKRSKDTITSNDSSNIQGNADSSYQQMMDPESSQATGEHVSGTSDSEEIGDRGTEADEKRLEPDPKRRNTEIVVADPAASSHRTMAEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNNASQFKSQNNISEKPNFGSIGNGGSSEQQPVARLRLKEERIT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02825 428 Pfam WRKY DNA -binding domain 315 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g02825 428 Pfam WRKY DNA -binding domain 154 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g02825 428 MobiDBLite consensus disorder prediction 390 428 - -
Trre9g02825 428 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 397 IPR044810 GO:0003700
Trre9g02825 428 MobiDBLite consensus disorder prediction 219 256 - -
Trre9g02825 428 SUPERFAMILY WRKY DNA-binding domain 306 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g02825 428 Gene3D WRKY domain 139 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g02825 428 Gene3D WRKY domain 299 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g02825 428 MobiDBLite consensus disorder prediction 390 415 - -
Trre9g02825 428 FunFam WRKY transcription factor 141 213 - -
Trre9g02825 428 ProSiteProfiles WRKY domain profile. 309 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g02825 428 ProSiteProfiles WRKY domain profile. 154 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g02825 428 MobiDBLite consensus disorder prediction 1 26 - -
Trre9g02825 428 SMART WRKY_cls 153 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g02825 428 SMART WRKY_cls 314 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g02825 428 MobiDBLite consensus disorder prediction 257 284 - -
Trre9g02825 428 FunFam WRKY transcription factor 33 301 367 - -
Trre9g02825 428 MobiDBLite consensus disorder prediction 202 294 - -
Trre9g02825 428 SUPERFAMILY WRKY DNA-binding domain 151 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02825 Trre-Chr9 35882909 35885904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02825 8 428 WRKY Transcription Factor Family AT2G03340 49.715 6.11e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g02825 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02825 - - gmx:100127369 610.527