Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02801 ATGGAACAACAACAACAAGACTCAACAACAAACACTAACCAAAATCACACAACAAAAACAACAACCTTAATTAAAACAAATGGAACAACAAACTCTTATCATCAACAACATCAACATCATCAATATTATCAACAATATCATCATCAACAACATCAAAATCAACTTCAACAATACTCAACTCAACTTGGTTTCTTCAACAACAAAAACTATCAAAGATATTACCCTGCTCTTCTTCCTTTACCTTCACTTCAACAACTACCTTTGATTCCATCTTTTCCTCAAAATCAAAACTTTAAACTAAAAACCCATTTGCATAAACTTCCATGCAAACTCAATACTTCTCCTTCATCAGATTACAATCTCTCTCAACTATCACTTACTTCTGCTCCAAAGGAACTTCAGAAGCAAACAAAATCATCCTTTAAAGAAGTTGATGAGAAAAAGCTGATTTCAACAAGGAAGCCACAAGAAGTGATTGTTGCAATAAGGCCAGATTCAGGTGGACAAGAAGGTCCTGTGATCTCTCTTCTAGCAAACCACTTTTTGGTGAAGTTTGATTCATCACAAAAAATATATCATTACAATGTTGAAATTACTCCTCATCCCTCTAAAGATGTTGCTAGAGCAATCAAACATAAATTGGTGCATAACAATTCCGAGATTTTATCGGGCGCTTTGCCGGCGTATGATGGGAGGAAGAATCTTTATAGTCCAATTGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTCCCTATCCCAACTAGCAAATCGACGTCACTTTATGGAGAAACAAATGATACGAAAGAGAAGCGTGAACAGCATAAACTTTTTCGGATAAATATCAAACTAGTCTCGAAGATTGATGGAAAGGAGTTGGCTAACTACTTGAGCAAAGATGGTGAGGAAGGGATTCCACTTCCGCAGGATTATTTACATGCTTTGGATGTTGTTTTGAGGGAAAGTCCGACCGAGAAATGTATACCTGTTGGAAGGTCATTCTATTCGAGTTCGATGGGAAGAGGAAAAGATATTGGTGGTGGTGCTGTTGGATTGAGAGGCTTTTTTCAGAGCCTTAGACCAACTCAACAAGGACTTGCTCTCAACGTCGATTTCTCAGTAACCGCTTTCCATGAGAGTATAGGAGTTATTCCGTATTTGCAGAAACGTCTTGAGTTTTTTAGAGACCTTTCTCAAAGGAAGACAACTCAGTTAACTTGCGAAGAAAGGAAGGAAGTGGAGAAAGCATTGAAGAACATTAGAGTCTTTGTTTGCCATAGAGAAACTGTTCAGAAATACCGTGTCTATGGTTTAACCGAAGAGGCAACTGAAAATATTTGGTTTCCTGATAGAGACGGAAAGAATCTTAGGCTAATGAGTTACTTTAAAGATCACTATAACTATGACATTCAATTCAGAAAGTTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCCATGGAGCTCTGTGTGATCTGTGAAGGACAGAAGTTCCTTGGGAAACTGTCGGATGATCAGACGGCAAAAATACTCAAGATGGGCTGTCAAAGACCGGGAGAACGAAAAGCCATCATCGAAGGAGTCATGAGAGGAAATGTTGGTCCTACCAGTGGTGACCAGGAAGGGGAATTCAAGCTCCAAGTCTCAAGAGAAATGACAAAGTTGACTGGGAGAATTCTTTACCCTCCAAAACTAAAGCTCGGAGACGGAGGTCATGTGAGAAACCTGACTCCTTCACGTCACGATCGCCAATGGAACCTACTAGATGGCCATGTCTTTGAAGGAACAACAATTGAAAGGTGGGCACTAATAAGTTTTGGAGGCACACCCGAGCAAAAATCTCATATCCCAAGATTCATAAACCAGTTAACTCAAAGATGCGAACAATTAGGCATTTTACTTAATAAGAACACAGTTATTAGTCCACAGTTTGAATCAATCCAAGTTCTTAACAATGTTACACTTTTGGAATCTAAGCTCAATAGAATCCAAAGGATTGCTTCAAACAAGCTACAGCTTCTTATTTGTATAATGGAGAAAAAACACAAAGGGTATGGGGACTTGAAACGAATTGCCGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGCTTGTATCCTAATCTCATCAAATTAAGTTCACAGTTTTTGGCTAATTTGGCTCTCAAGATCAATGCTAAAGTCGGTGGATGTACAGTTGCTTTGTACAACTCGCTTCCTTCTCAGTTACCTCGTCTTTTCAAGATCGATGAACCAGTGATGTTCATGGGAGCCGATGTGACACATCCTCATCCTCTTGATGATTCGAGTCCATCTGTTGCTGCTGTTGTCGGTAGCATGAATTGGCCAACAGCAAACAAATATATTTCAAGAATAAGGTCTCAAACACATAGACAAGAAATCATTGCGGATCTTGGCGCAATGGTTGGAGAATTGCTTGACGATTTTTATCAAGAAGTAGAAAAACTCCCCAACAGAATAATTTTCTTCCGAGACGGAGTTAGCGAAACTCAATTTCACAAAGTGTTGCAAGAGGAACTTCAATCCATAAAACAAGCATGTTTATCATCAAGGTTTCATGGTTATAAACCTTTTATTACTTTTGTAGTTGTACAAAAGAGACATCACACAAGGTTGTTTCCTGCTGACACCGATCAATCTTCAACGCAGAACAATTTTCATTTTCAATACGAAAATATTCCTCCAGGGACTGTGGTTGATTCTGTGATTACTCATCCAAAGGAATTTGATTTCTATCTGTGTAGTCATTGGGGTGTCAAGGGAACAAGTAGGCCAACTCATTACCATGTTTTGTGGGATGAAAATCGGTTCACTTCCGACGAACTTCAGAAGCTGGTTTACAATTTGTGCTTTACTTTTGTTAGGTGTACTAAGCCAATTTCTTTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGTAGACTCTACCTTGAAAGATCAGAGTCATTAGGTTTGTTCAAAAGTGCTTCTACATTATCAAGAGCTGCTCCTCCAAAGACACCACCTCTACCTAAACTTAGTGAAAACATAAAGAAGCTCATGTTTTACTGCTAG 3093 0.3883 MEQQQQDSTTNTNQNHTTKTTTLIKTNGTTNSYHQQHQHHQYYQQYHHQQHQNQLQQYSTQLGFFNNKNYQRYYPALLPLPSLQQLPLIPSFPQNQNFKLKTHLHKLPCKLNTSPSSDYNLSQLSLTSAPKELQKQTKSSFKEVDEKKLISTRKPQEVIVAIRPDSGGQEGPVISLLANHFLVKFDSSQKIYHYNVEITPHPSKDVARAIKHKLVHNNSEILSGALPAYDGRKNLYSPIEFQNDKLEFYISLPIPTSKSTSLYGETNDTKEKREQHKLFRINIKLVSKIDGKELANYLSKDGEEGIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRGKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFFRDLSQRKTTQLTCEERKEVEKALKNIRVFVCHRETVQKYRVYGLTEEATENIWFPDRDGKNLRLMSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKAIIEGVMRGNVGPTSGDQEGEFKLQVSREMTKLTGRILYPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVFEGTTIERWALISFGGTPEQKSHIPRFINQLTQRCEQLGILLNKNTVISPQFESIQVLNNVTLLESKLNRIQRIASNKLQLLICIMEKKHKGYGDLKRIAETSVGVVSQCCLYPNLIKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFKIDEPVMFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIADLGAMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFHKVLQEELQSIKQACLSSRFHGYKPFITFVVVQKRHHTRLFPADTDQSSTQNNFHFQYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENRFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFKSASTLSRAAPPKTPPLPKLSENIKKLMFYC 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02801 1030 CDD Piwi_ago-like 547 990 IPR045246 -
Trre9g02801 1030 SMART PAZ_2_a_3 389 529 IPR003100 GO:0005515
Trre9g02801 1030 MobiDBLite consensus disorder prediction 1 20 - -
Trre9g02801 1030 Pfam Piwi domain 678 988 IPR003165 GO:0003676
Trre9g02801 1030 SUPERFAMILY PAZ domain 376 534 IPR036085 GO:0005515
Trre9g02801 1030 SUPERFAMILY Ribonuclease H-like 661 991 IPR012337 -
Trre9g02801 1030 FunFam Protein argonaute 7 376 502 - -
Trre9g02801 1030 FunFam Argonaute 10 563 739 - -
Trre9g02801 1030 Gene3D - 563 739 - -
Trre9g02801 1030 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 157 993 - -
Trre9g02801 1030 Gene3D - 749 1030 IPR036397 GO:0003676
Trre9g02801 1030 MobiDBLite consensus disorder prediction 31 53 - -
Trre9g02801 1030 Pfam N-terminal domain of argonaute 174 320 IPR032474 -
Trre9g02801 1030 Gene3D paz domain 375 502 - -
Trre9g02801 1030 SMART DUF1785_2 329 381 IPR014811 -
Trre9g02801 1030 Pfam PAZ domain 392 514 IPR003100 GO:0005515
Trre9g02801 1030 ProSiteProfiles Piwi domain profile. 677 991 IPR003165 GO:0003676
Trre9g02801 1030 SMART Piwi_a_2 677 991 IPR003165 GO:0003676
Trre9g02801 1030 Pfam Argonaute linker 1 domain 330 379 IPR014811 -
Trre9g02801 1030 CDD PAZ_argonaute_like 385 497 - -
Trre9g02801 1030 ProSiteProfiles PAZ domain profile. 389 498 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02801 Trre-Chr9 35498101 35502497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02801 162 1030 Eukaryotic Initiation Factors Gene Family AT1G48410 41.943 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02801 K11593 - gmx:100797755 1710.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02801 9 35498101 35502497 Trre9g02801 9 35498101 35502497 ECH