Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02764 ATGGCTGCCACATTCTATAACCTTAAGTCTGAATCTGGGTTGAAGAAGCTTAATGAGTACCTTCTCACACGCAGTTATATCACTGGGTACCAAGCTTCAAAAGATGATATCACTGTTTACGCTGCTTTGCCATCAGTTCCATCAAGTGAATTTGTGAATGTGGCCAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCTGGTGTTTCTGGTGTCATTGTGGAATCTTCTCTAGTAACTGAAGAGGCTGTTTCAACTCTTCCAGTTGCTGACACAATGGCCACTGAAGCAGAGGATGATGATGTGGGTTTGTACAGTGAAGAGACCGAAGAAGAGAAGAAGAAGGAAGCTATGGAATGGGCAGCAAGCATGAAGGCATCTGGCAAAAAGAAAGAGAGTGGGAAATCATCTGTAGTGAAATCAGTTCAATTGGAAGGCTTATTGTGGGGTGCATATCTCTCATCTAAATTTACAGCCGTTGACGGGCCCTCACGTTATCGCGCAGACTTTCATGAGATTAAGCAAATTGGTAGAGGGAATTTTAGTTGTGTTTTCAAAGTATTAAAGCGAATAGATGGCGGCATGTATGCTGTGAAACGCAACACAAATAAGTTACAGCTGGAAACAGAAAGGAGAAAAGCTTTGATGGAAGTCCAAGCTTTGGCCTCCTTGGGTTCCCACGAGAATATTGTGGGTTATTACACTTCATGGCTTGAAAATGAACAGTTGTACATTCAAATGGAGATATGTGATCATACTTTATCTGTAAAAAAAGACTTCGAGTTTTTAGCTGAAGGTGAATTGTTAGAAGCTTTATATCAGGTTGGCAACGCACTGCAATTTATGCATGGGAAAGGAATAGCTCATATTGATGTTAAGCCTGATAATATTTATGTCAAAAATGGTGTGTATAAGCTTGGTGATTTCGGATGTGCAACTCTTATTGATAATAGCTTGCCAATTGAGGAAGGAGATGTTCGTTATATGCCCCAGGAAATCCTTAATAAGAATTACGATCACCTTGACAAGGTTGATATTTTCTCCTTGGGAGTTTCTATTTATGAACTCGTTTTAAAATTGCCTTTACCACAACCAGGAGGAGGTCATGTTTTGAATTTTAAAGAGGGCAAGTTACCACTCCTGACCTGTCATTCACTGCAATTCCAAAACTTGCTCAAGGCCATGATCGATCCTGATCCAGTCAAGAGGCCTTCTGCTAGAGAGTTGGTAGAGAACCCAATTTTCAAGAGGGCCTCAAAAAACAACTAA 1272 0.4057 MAATFYNLKSESGLKKLNEYLLTRSYITGYQASKDDITVYAALPSVPSSEFVNVARWYKHIDALLRISGVSGVIVESSLVTEEAVSTLPVADTMATEAEDDDVGLYSEETEEEKKKEAMEWAASMKASGKKKESGKSSVVKSVQLEGLLWGAYLSSKFTAVDGPSRYRADFHEIKQIGRGNFSCVFKVLKRIDGGMYAVKRNTNKLQLETERRKALMEVQALASLGSHENIVGYYTSWLENEQLYIQMEICDHTLSVKKDFEFLAEGELLEALYQVGNALQFMHGKGIAHIDVKPDNIYVKNGVYKLGDFGCATLIDNSLPIEEGDVRYMPQEILNKNYDHLDKVDIFSLGVSIYELVLKLPLPQPGGGHVLNFKEGKLPLLTCHSLQFQNLLKAMIDPDPVKRPSARELVENPIFKRASKNN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02764 423 FunFam Elongation factor 1-delta 1 3 75 - -
Trre9g02764 423 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 145 420 - -
Trre9g02764 423 FunFam Wee1-like protein kinase 250 420 - -
Trre9g02764 423 Gene3D Transferase(Phosphotransferase) domain 1 251 421 - -
Trre9g02764 423 SUPERFAMILY GST C-terminal domain-like 8 68 IPR036282 -
Trre9g02764 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Trre9g02764 423 SMART serkin_6 171 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02764 423 SUPERFAMILY Protein kinase-like (PK-like) 165 419 IPR011009 -
Trre9g02764 423 Pfam Protein kinase domain 171 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02764 423 Gene3D - 2 76 - -
Trre9g02764 423 ProSitePatterns Protein kinases ATP-binding region signature. 177 200 IPR017441 GO:0005524
Trre9g02764 423 Gene3D Phosphorylase Kinase; domain 1 159 250 - -
Trre9g02764 423 ProSiteProfiles Protein kinase domain profile. 171 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02764 Trre-Chr9 34914858 34918958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02764 159 418 Core Cell Cycle Gene Families AT1G02970 66.794 2.68e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Trre9g02764 Pkinase 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02764 K06632 - gmx:547742 412.92