Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02758 ATGGACAATCAATGTCACATTATTGGTATGGTAAACCCAGGCAAAGAGTCTTGGTCGTTGAATGTTCGTGTTCTTCGTATATGGAAAGTTTATTGTTTCATGAACCCAGAAACTGTTAGCTCCATTGAAATGGTTCTGATCGATGAAAGGGGTTCCAAAATTCATGCTTCTGTTCATCGCCACCTGATAAATATGTTCTGTGATAAAATCTTCGAAGGGAATGTGTATTGCATGTCCCATTTCATTGTTGTTCCAGAAACTGCTCTGTATCGTTCAACTGATCATCCCTATAAACTTTTATTTGACATGGAAACTAAAGTAGATTCTTCTGAAAATAATACAATAGACAAGTATGGTTTTTCTTTAAAGACCATTGGAGATGTTTGTGGTTATGGACCTAATCATGGATATTTGGTTGATGTTGTTGGTTTGCTTACTTCCATTTCTGCTGAAAGTGATTATGTTGTTGAAGGAAAAGTAACCAAGATGGTTGTTCTTAGGTTGCTTGATAATAGTGGAGGTTGTCATTGTGCATTGTATGGATCTTATGTTGATGAACTCCAAGGTTTGGTTTGCAATAGTGATGGTAGTATTCCAGTGTTTGTTATTCGATTTGCAAAAATAGGAATTTTCCAAGGCAATGTTTGTGTTCAAAATGAACTAAATGCTACCATGATTTATGTTAATCCCTCAATTCCAGAGATCGATTCTTTCAAGCAAGGAATATCAATTGTTGGAATGGTTCTTTGTTCTTCCTTACCTTGCATTGGTCATGATGATACGGATTCTCTTGAAGATGATTTCCTGTTGACTTATCCAGCAATCTCCATAGCTAACTTACTTCAATCTAACACAGACGGTATCTATATTGTGGGTGGTGTTGTTGAGGGTTTGGTTAATCCATATAATTGGTGGAATGCAGCTTGCAATTGTCATACAAGTTTGATTCCTGATTCAGTGGCATACTATTGCAATAAGTGTGACATACATGTTCCCAAATTTATACCAAGGTTTAGGTTAAAACTAAGGGTTGTTGATGGTACTGGTGAAGCTGTGTTTGTTGTTTTTGACCGAGATTTGAATCTATTGGTTGGAGAAAATTGCCAAAACTTGGTTACCCTGTCTGAGGGGAAGAATGCTCAATATTATCCTCCTCAACTAGATTTGCTTATAGGGAGGAAAATGTTGTTCAAGGTTGTCACGACTACTAATATTGATTCTGCCATGGTCCCAGGTTCATTTAAAGTTGAACGGATTTGCAGTGACTTGGCTATTATTGATGACTATTATTCTCCGTTTATAAACGATGATTCTGAGTCCGACGGTGACGAAAGTCTAGATGGTGAAATAGTTAATTTTGAACACGATGCTTCTGATTTTGGAAATATGGCTCCTCTTTCCTCAGCCAACCCTGGGGAGGTAATTGACGTTGCTGATAATAGTCCAAAGATTTTTGATGTGCTTGCTACTACAAGTGTGGATCTCGAGCTACACCAAATTTTGTCTGCCAAGGATGTTTTATCAGCTGCTTCAGCTGAGTGTCATGACGATGCATTGACTCCAACAAAGATCAGCAAACAGTTTGGCAAATGA 1593 0.3766 MDNQCHIIGMVNPGKESWSLNVRVLRIWKVYCFMNPETVSSIEMVLIDERGSKIHASVHRHLINMFCDKIFEGNVYCMSHFIVVPETALYRSTDHPYKLLFDMETKVDSSENNTIDKYGFSLKTIGDVCGYGPNHGYLVDVVGLLTSISAESDYVVEGKVTKMVVLRLLDNSGGCHCALYGSYVDELQGLVCNSDGSIPVFVIRFAKIGIFQGNVCVQNELNATMIYVNPSIPEIDSFKQGISIVGMVLCSSLPCIGHDDTDSLEDDFLLTYPAISIANLLQSNTDGIYIVGGVVEGLVNPYNWWNAACNCHTSLIPDSVAYYCNKCDIHVPKFIPRFRLKLRVVDGTGEAVFVVFDRDLNLLVGENCQNLVTLSEGKNAQYYPPQLDLLIGRKMLFKVVTTTNIDSAMVPGSFKVERICSDLAIIDDYYSPFINDDSESDGDESLDGEIVNFEHDASDFGNMAPLSSANPGEVIDVADNSPKIFDVLATTSVDLELHQILSAKDVLSAASAECHDDALTPTKISKQFGK 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02758 530 CDD RPA1_DBD_C 279 419 IPR047192 -
Trre9g02758 530 PANTHER OS03G0429900 PROTEIN 303 403 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g02758 530 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Trre9g02758 530 SUPERFAMILY Nucleic acid-binding proteins 279 411 IPR012340 -
Trre9g02758 530 CDD RPA1_DBD_B_like 140 240 - -
Trre9g02758 530 Pfam Replication factor-A C terminal domain 300 399 IPR013955 -
Trre9g02758 530 SUPERFAMILY Nucleic acid-binding proteins 7 110 IPR012340 -
Trre9g02758 530 CDD RPA1_DBD_A_like 19 107 - -
Trre9g02758 530 Gene3D - 3 109 IPR012340 -
Trre9g02758 530 SUPERFAMILY Nucleic acid-binding proteins 120 245 IPR012340 -
Trre9g02758 530 Gene3D - 114 245 IPR012340 -
Trre9g02758 530 Gene3D - 262 417 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02758 Trre-Chr9 34878789 34881235 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02758 8 240 Core DNA Replication Machinery Family AT5G45400 26.860 1.22e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02758 - - tpra:123893724 491.115