Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02755 ATGAGTAACAATGCGTTTGATTTGCTTGGTTCCGTTAGTTCTGGAAAAGAGGGTTGGCGTTTTAAAGTTCGTGTGCTTCGCTTGTGGACAGTTGCTTCATTCATGAAACCTGATCAACCTAACTCACTTGAGATGGTACTTATTGATGATAAGGGTACGAAAATTCACGCATCTGTTCGCCGACAATTGGTCTATATGTTTCGTTCGAAAATCATTGAAGGCAATGTTTATAAGCTATCGTATTTCTCAGTTACACCAGAGTCTGGTTTTTACCGTCCCACTCCACACCCATATAAACTTAATTTTGAGATGAAGACAAAAGTGCAGATTTGTGATGACAATGCTATTGATCGATATGGATTATCCCTCACAACTATTGGAGACATTTGTGGTTATGGACCTGATCATGATTTCTTGGTTGATGTTGTTGGGTTGATCACTGGTATATCGGCTGAGAGGGAGTATATCCGTGACGGAAAAGTTATTAAGATGGTTTTGTTGGAGTTGTCTGACAACAGTGGGAAATGTGAGTGTGCATTGTTTGGTGATTATGTCAAAGATCTTCAAGGAATGATTGAGAATTCTGGTGGTGGCCTCCCAATTGCTGTTGTTCAGTTTGCTAAAATTAAAATCTTTCAAGGAAAAGTGTCAATTCAAAATGTTTTGAATGCCACAAGGGTTTATATCAATCCTGCTATAGCAGAGGTTGATACCTTCAGGGAATTACTGACCCTTGATGGGGTTGATCACACTTCTTCAATTCCTGCTATTGGTCCTCGTGTTAGACCATCATTTGAGCAAGATTTCTTGGTGAATTATCCAAAAACCTCCATAGCTAATTTAGTTGAAACTGTGGAAGATGGTATTTATGTTGTCAGTGCTGTTGTTGGTGGGTTGGTTGATGATGAAGAATGGTGGTATCCGGCTTGTCGGTGTCAAAGAAGTGTCACTGCTGACTCTGGTGCATACTATTGCAAATTATGTGTTAAACATGTCTTCAAGATGGTTCCCAGGTTCCGTGTAAAGTTAAAAGTGGATGATGGAACTGCTCAGGCTGTGTTTGTTGTTTTTGATTCTGATATGAGTGTATTGGTTGGAACAGCATGTCATGAATTGGTTGCTTCTGCCAAGGCTCAAAATGCTGGTTATTATCCTCCTCAACTAGAGTTGCTGAAAGGCACAAAAATGTTGTTCAAGGTTGAAAAAATATCATCTGTCCCCCTTCAATTTGATGGTGCCTTTAGAGTTAAAAGGGTTTGCACTGATCTGGCTATAATGGAAGAATATGATTCAGCTCTGGCTAATGGTGCTTCTCGTGCTAACGATGGGGTGGGCGTTGAAGAAGATTCTGTTGACAAATCACAGGATGAGTATTTTGTTTCAAATCTGATTGTATCTCCTACTGCTCTTACTGCCCCACAAGATTCTGAAGTTTCTGCTGGTCATACTATGACTGAGATGATCAATTTGAGTGACAATTCTGATGATTGTGTTGAAGTTTTCCGTCGTGAAAGTGGTGGCTTCCTTGATGTTAAAATTGTTGGCGTTAAACGTAATCTATCTGCTGCTTTCTCTGAGTGTGGTTCCATTGAAGCATCTACTTCAAAACCTGACAAAGCTCTTGATGATTAA 1632 0.3989 MSNNAFDLLGSVSSGKEGWRFKVRVLRLWTVASFMKPDQPNSLEMVLIDDKGTKIHASVRRQLVYMFRSKIIEGNVYKLSYFSVTPESGFYRPTPHPYKLNFEMKTKVQICDDNAIDRYGLSLTTIGDICGYGPDHDFLVDVVGLITGISAEREYIRDGKVIKMVLLELSDNSGKCECALFGDYVKDLQGMIENSGGGLPIAVVQFAKIKIFQGKVSIQNVLNATRVYINPAIAEVDTFRELLTLDGVDHTSSIPAIGPRVRPSFEQDFLVNYPKTSIANLVETVEDGIYVVSAVVGGLVDDEEWWYPACRCQRSVTADSGAYYCKLCVKHVFKMVPRFRVKLKVDDGTAQAVFVVFDSDMSVLVGTACHELVASAKAQNAGYYPPQLELLKGTKMLFKVEKISSVPLQFDGAFRVKRVCTDLAIMEEYDSALANGASRANDGVGVEEDSVDKSQDEYFVSNLIVSPTALTAPQDSEVSAGHTMTEMINLSDNSDDCVEVFRRESGGFLDVKIVGVKRNLSAAFSECGSIEASTSKPDKALDD 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02755 543 SUPERFAMILY Nucleic acid-binding proteins 286 400 IPR012340 -
Trre9g02755 543 PANTHER OS03G0429900 PROTEIN 8 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g02755 543 CDD RPA1_DBD_A_like 22 108 - -
Trre9g02755 543 CDD RPA1_DBD_B_like 141 243 - -
Trre9g02755 543 Pfam Domain of unknown function DUF223 44 112 IPR003871 -
Trre9g02755 543 Gene3D - 271 428 IPR012340 -
Trre9g02755 543 Gene3D - 9 114 IPR012340 -
Trre9g02755 543 Gene3D - 115 250 IPR012340 -
Trre9g02755 543 SUPERFAMILY Nucleic acid-binding proteins 121 248 IPR012340 -
Trre9g02755 543 SUPERFAMILY Nucleic acid-binding proteins 6 113 IPR012340 -
Trre9g02755 543 Pfam Replication factor-A C terminal domain 293 400 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02755 Trre-Chr9 34871531 34873966 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02755 19 372 Core DNA Replication Machinery Family AT5G45400 23.035 5.95e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02755 - - tpra:123893724 679.478