Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02743 ATGGGGAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACAACTGGGAGACAAGCAACCTATGCAAAAAGAAAAAATGGAATAATGAAGAAAGCTAGTGAATTGTCTATATTGTGTGATATAGATATTATACTTCTCATGTTCTCTCCGGGTGGAAAACCTTCATTATGCACAGGGAGACGCAACAACTTTGAGGATGTAATTTCAAAGTTTGCTCAACTAACCTCACAAGAAAGGGCAAAGAGGAAATTGGAGAGTCTTGAAGCACTAAAGAAAACATTTAAGAAGTTAGATCATGATGTGAATATACAAGACTTTTATGGTACAAGTGGTCAAACTGTAGAGGATTTGAGTGATCAAGCTAAGCTATTACATAACCGTATCTCCGAAATACACGAGCGACTAAGCCATTGGAGTGACATTGAAAAAATTAGCAGTGTGGATGAATTGGGACAGATGGAAAATTCACTCAAGGAGTCTCTTAATCAAATTAATACACATAAGGAAAATGTACAAAAACAACAATTGGCATCACTGCAATGTAATAATCAGTTCAATGAAATGCATGTTCCCTACAAAATGAATGCTCAACAGCATCTACAATCTCTATCATGGATTGTTAATGGTGACAGCCAGAATATAGTACTACCTGAAGACTCAAACTTGCTTCTCCCAAAAGATGTAGAGGGCTCAACAAGCTCATCATTTGGAAGCTATGCAAGTTATCTTGGCTCAAACACAAAACCAAACATTTCCAATTCAGCTCAAGAAAATTGTGTCCTTAGTGACATGAGCAATAATGCTACCAATGCTCCTATTAGACTACAGTTTAATGGACAATTTCCATACATACCAAACAATTTTAACATAATGAATGATATGAAACTCCAACCAGCACCACTAATGAATAATAATCCACATGAAAACCAAGTAGATCATAACTATCATGTGAATGGAAACTTTGAAGCACCTAAACAAGTGTTTGATCAACCTAACCACCATGGTTGGAATACTAATTCTGGTCCTTGTGCTGTTAATATCTTTGATGAACATTTGTATCCACAGCCAAATTTTCCACAAGTGCATTTTGGCTTCACATAG 1101 0.3633 MGRVKLKIKRLENTTGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCTGRRNNFEDVISKFAQLTSQERAKRKLESLEALKKTFKKLDHDVNIQDFYGTSGQTVEDLSDQAKLLHNRISEIHERLSHWSDIEKISSVDELGQMENSLKESLNQINTHKENVQKQQLASLQCNNQFNEMHVPYKMNAQQHLQSLSWIVNGDSQNIVLPEDSNLLLPKDVEGSTSSSFGSYASYLGSNTKPNISNSAQENCVLSDMSNNATNAPIRLQFNGQFPYIPNNFNIMNDMKLQPAPLMNNNPHENQVDHNYHVNGNFEAPKQVFDQPNHHGWNTNSGPCAVNIFDEHLYPQPNFPQVHFGFT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02743 366 Coils Coil 77 97 - -
Trre9g02743 366 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre9g02743 366 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre9g02743 366 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre9g02743 366 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre9g02743 366 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Trre9g02743 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Trre9g02743 366 Coils Coil 150 177 - -
Trre9g02743 366 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 208 - -
Trre9g02743 366 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Trre9g02743 366 Coils Coil 114 134 - -
Trre9g02743 366 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Trre9g02743 366 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02743 Trre-Chr9 34638828 34642856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02743 1 359 Type I MADS-box Gene Family AT2G03060 46.114 2.42e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre9g02743 SRF-TF 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02743 - - lang:109356063 524.242