Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02736 ATGCAAATGGTATATTCAGACCTTGGATCTCTCTCTCTTACTTCAAACTATGGTGTAGTTTCTTCAAGTACTTCAAATAAAGAGTTAAGTAAGAGTATTGCATCAAGATGGAGTAGTTCTTCTTCTTTTACATTTATGAGAGAGTCATTTCTTTCTAAAGGATTTCAAGAAGAACAAAAAATGGATGATGATGATGATGATGATGATATTATGGAAGGAAAAGGTTCTTATTGTAGTGAAGATGGTGAAAATAGTGAGAGAACAAATCATCATCATAATATTAACTTCAATGATGAGTTAGAAAACCCTAATGGAAGTGGTAAAGAAGAAGATAATGGGCAATCTAGTAAATGTGCAAGAGGACATTGGAGACCTGCTGAAGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAAAATTGGAATCTCATAGCTGAAAATTTGGAAGGAAGATCTGGCAAGAGTTGTAGGCTAAGATGGTTCAACCAATTGGATCCAAGAATCAATAGAAGAGCATTCAATGAAGAAGAGGAAGAAAGACTAATGCAAGCACATAGAATTTATGGAAACAAATGGGCCATGATAGCAAGACTATTCCCAGGAAGAACAGACAATGCTGTAAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCCAATGCATATAGGAGAAGAAGATTAAGCCAAAATGTTTACAGAAGAATGGATCAAAATCCAAGCTTTATCTGCAGGGACAACACAAACACAACAACAATGGAAACAGAATCATCATCACCTTATTTTCTCAATGGAGCCCCACTTGGTAATAGTATGTCCATTTTCCCATATGCTACTTCTTTCCAACATGGTGTTCATGGTGGTGGGGTTGATTATGGTTTAAATGTATTACCTCACATGAGTGGTGAGAGAGAACCTATTCAAGGACCCCTACATGTTGGTCTCTATGCTCAACAAGCACCATTTGATTTCTTCTCCGGTGGTAGAAATAATGGCATGGTAGTGAAAGAGTCTTTCAATCATAATAACAATTATTGGGATGGGACAAACAATGAATATCAACAACATCAACAACAATTATCTAGTTTCTACCATCATTATCCTCAACAACAATATCTTATGTCAATGCAACAACAAAACAATCTAAATTTTTACAACTTCTCAAATTCATCATCATCATCATCATCAAGACATCATCATAATGCAGAAAACAGTGAAAAAGTTGTGATTGGTGAGACCAAAGATGCTGTTCAAACCCCTCCTAAATTTTTTGACTTCCTTGGAGTAGGTGCTACATGA 1314 0.3569 MQMVYSDLGSLSLTSNYGVVSSSTSNKELSKSIASRWSSSSSFTFMRESFLSKGFQEEQKMDDDDDDDDIMEGKGSYCSEDGENSERTNHHHNINFNDELENPNGSGKEEDNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFNEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSNAYRRRRLSQNVYRRMDQNPSFICRDNTNTTTMETESSSPYFLNGAPLGNSMSIFPYATSFQHGVHGGGVDYGLNVLPHMSGEREPIQGPLHVGLYAQQAPFDFFSGGRNNGMVVKESFNHNNNYWDGTNNEYQQHQQQLSSFYHHYPQQQYLMSMQQQNNLNFYNFSNSSSSSSSRHHHNAENSEKVVIGETKDAVQTPPKFFDFLGVGAT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02736 437 FunFam MYB transcription factor 120 171 - -
Trre9g02736 437 CDD SANT 123 164 IPR001005 -
Trre9g02736 437 MobiDBLite consensus disorder prediction 16 39 - -
Trre9g02736 437 CDD SANT 174 214 IPR001005 -
Trre9g02736 437 Pfam Myb-like DNA-binding domain 123 183 - -
Trre9g02736 437 MobiDBLite consensus disorder prediction 72 97 - -
Trre9g02736 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 221 IPR017930 -
Trre9g02736 437 Gene3D - 120 171 - -
Trre9g02736 437 ProSiteProfiles Myb-like domain profile. 167 217 IPR001005 -
Trre9g02736 437 ProSiteProfiles Myb-like domain profile. 115 166 IPR001005 -
Trre9g02736 437 MobiDBLite consensus disorder prediction 98 112 - -
Trre9g02736 437 Gene3D - 173 244 - -
Trre9g02736 437 SUPERFAMILY Homeodomain-like 119 213 IPR009057 -
Trre9g02736 437 SMART sant 119 168 IPR001005 -
Trre9g02736 437 SMART sant 171 219 IPR001005 -
Trre9g02736 437 MobiDBLite consensus disorder prediction 391 411 - -
Trre9g02736 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 166 IPR017930 -
Trre9g02736 437 PANTHER MYB PROTEIN-RELATED 116 393 - -
Trre9g02736 437 MobiDBLite consensus disorder prediction 54 123 - -
Trre9g02736 437 FunFam MYB transcription factor 173 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02736 Trre-Chr9 34534654 34537137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02736 113 245 MYB Transcription Factor Family AT1G69560 80.000 1.30e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g02736 Myb_DNA-bind_6 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02736 K09422 - gmx:100789305 388.652