Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02727 ATGATGATTAATGATTCAACCATGAAGCTTTTTGGGAGAACCATTTTTCTAACACACAACCACATGGATGTCTCTTCCAATGATTCTTCCTCAGAATTTGCAACTCATATTCCTTATGAAGATTTATCTGATCATAGTCTTCATTCATCTTTATCTTCACCTTCTCCACTTGAAGTGAATTCTCAAACTCAATATGATGCTAAGAGATATAAGGAAACATCAATGAAACAATTCACCTCAGTGCAAGTTGATGATGAGGTCTCACAACAAACCAAAGAGGATTTAAAATCTCCAACATCTTCAAGCCTTATTGAGAACCCGAAAACACCCTCATCAGAAACCGAAACTTCTCAACTCGATTCCACTAAAATTGATGAACAAAGTGATATGTCACAAGACAAATCTCCAAAGAAACCAGACCAAATTGTTCCATGTCCAAGATGCAAAAACATGGACACAAAATTTTGTTACTACAACAACTACAACGTCAAACAGCCGCGACATTTCTGCAAAAACTGCCAAAGATATTGGACTGCTGGAGGAACCACGAGAAACATGCTTGTAGGCGCAGGTCGGCGCAAGAACAAATTATCTTCTTCATTTTCTTCCGATGTCTCACATTCTCGTCAAATGAATACTGTCTTGACCTTTGGATCAGATTCTTCAACTTCACTTGACAAGAAAATGAATGTTGACTCACATGAAGAAAAAACTGATAAAAGTTATCAAAATTTTCCTCCACAGTTTCCATGGAACCCTGCAATGTCTTATCCTGTGACATTCTATCCCAATATAGCATATTATGGTGGTTGTTTGGTACCATCTTGGAGTGTACAACCTATCTCACCACAATCTTGTGATCCAACTTTAGGGAAACATTCTAGAGATGGAAAGATTTTCTCTCATTCGAACTCGGAGAAAGAAAAACTTTGCTCAGAAAATAACAAGATAGAAAGTAATAATACTAGTGAGTTGATCCCTAAGACATTGAGAAGAAAACTTTTCAAGGGATTTGCATCTAAGGGTGTTGAGAATAATCAAGTGGTTGAAGTATCATCATCAGTAATGAAAGCTAACCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGAATTTGA 1122 0.3708 MMINDSTMKLFGRTIFLTHNHMDVSSNDSSSEFATHIPYEDLSDHSLHSSLSSPSPLEVNSQTQYDAKRYKETSMKQFTSVQVDDEVSQQTKEDLKSPTSSSLIENPKTPSSETETSQLDSTKIDEQSDMSQDKSPKKPDQIVPCPRCKNMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRNMLVGAGRRKNKLSSSFSSDVSHSRQMNTVLTFGSDSSTSLDKKMNVDSHEEKTDKSYQNFPPQFPWNPAMSYPVTFYPNIAYYGGCLVPSWSVQPISPQSCDPTLGKHSRDGKIFSHSNSEKEKLCSENNKIESNNTSELIPKTLRRKLFKGFASKGVENNQVVEVSSSVMKANPAALSRSLVFHERI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02727 373 Pfam Dof domain, zinc finger 140 196 IPR003851 GO:0003677|GO:0006355
Trre9g02727 373 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Trre9g02727 373 MobiDBLite consensus disorder prediction 119 136 - -
Trre9g02727 373 MobiDBLite consensus disorder prediction 78 144 - -
Trre9g02727 373 MobiDBLite consensus disorder prediction 93 118 - -
Trre9g02727 373 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
Trre9g02727 373 PANTHER CYCLIC DOF FACTOR 2 5 372 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02727 Trre-Chr9 34414171 34416086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02727 5 373 C2C2-Dof Transcription Factor Family AT1G69570 33.097 9.55e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre9g02727 zf-Dof 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02727 - - psat:127119499 503.827