Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02724 ATGGCTTCTGAAGCTGAAATTGCTGAACTTTCATCTTTGTTTGAAAGAATGATCAGAAACAGAGACATGTCTCTGGTTTTACCCTTTTTCTTTGGTCTTTCAGAATCTTCATCAATTTCAAGAAACAACAACGACCCAGATCAAGAATCAGAGAGTAACGATGATTCCAACCGTCAAAGAATAATCTTGGTGAATCCTTTAACACAGGGTATGGTTGTGATTGAAGGAGTTTCAAGTCTTGAAGATTTGTTTAATCAACTTGGGAGTAACAAGAATGGTCAACCACCAGCTTCAAAGGAATCAATTGAAGCTATGAAGAAAATTGAAATTGGAGAGGGTGATGATGATGGTGGTGAGTGTGTTGTTTGTTTGGATGAATTTGAGGTTGGTGGAGTTGTTAAAGAAATGCCTTGTAAACATAGGTTTCATGGTGATTGTATTGAGAAGTGGTTAGGGCTTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTGTTGATGAGAAAGGTGATGGAAAGAAAAGTGATGAAGAAGAAGGTGGAGAGAGAAGAAGGGTTGGTGGTGGTGGTGGTGGTAATGGTAATGGTGGTGGTGAAGTTTGGGTTAGTTTTTCTTTTAATAGGAGGAGTAGGGAAAATCAAAATCAAGCTACTTCTGGTGATGATGATGATGTTGAGGTTGAGAATTAA 690 0.3884 MASEAEIAELSSLFERMIRNRDMSLVLPFFFGLSESSSISRNNNDPDQESESNDDSNRQRIILVNPLTQGMVVIEGVSSLEDLFNQLGSNKNGQPPASKESIEAMKKIEIGEGDDDGGECVVCLDEFEVGGVVKEMPCKHRFHGDCIEKWLGLHGSCPVCRYQMPVDEKGDGKKSDEEEGGERRRVGGGGGGNGNGGGEVWVSFSFNRRSRENQNQATSGDDDDVEVEN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02724 229 MobiDBLite consensus disorder prediction 166 185 - -
Trre9g02724 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 44 165 - -
Trre9g02724 229 SMART ring_2 120 160 IPR001841 -
Trre9g02724 229 FunFam E3 ubiquitin-protein ligase RNF181 85 167 - -
Trre9g02724 229 MobiDBLite consensus disorder prediction 37 57 - -
Trre9g02724 229 Pfam Ring finger domain 119 161 IPR001841 -
Trre9g02724 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 167 IPR013083 -
Trre9g02724 229 SUPERFAMILY RING/U-box 109 166 - -
Trre9g02724 229 MobiDBLite consensus disorder prediction 165 229 - -
Trre9g02724 229 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02724 Trre-Chr9 34378326 34379015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02724 1 229 C3H Transcription Factor Family AT1G26800 49.372 2.17e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02724 - - ccaj:109816232 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02724 9 34378326 34379015 Trre9g02724 9 34378326 34379015 ECH