Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02702 ATGGGTAAGAAGAAGAAAAACAAAAACAAAAACAAGAACAAGAAGAAGAAAAACAAAAACAAAAACAAAAACAAGAACAAGAACAAGAAGAAGGCACTTTTGGTTGCCCTTTCTTACAGAGATAATGAAAAGAGATCCCTTGGACGTGCTCCTATTCGTTCTATTGGATATATGAAAAGACTTTTGATGGATGAATTTAAGTTTTGTCAAAGTGACATAAAACTTGTCACCGATGAACTTGGAAAAACTCCAACTGATGATGAAATAATAATACATTTGCTAAAACTGCTAGAAAATGCAAAACCCGGAGACGTACTTTTTTTCTACTACATAGGACATGGGGGTCGACGAGAATCAAAGAACTACAATAACAATTCTGGTTTTATTGAATATATTTCTCTTGGGATGAATGCTTTGGGGGTCAGAACTGTTATACCAGATTATACTCTCCGCCAGCTGGTTGAACCACTTCCACAGGGTTGTTCCTTTACATTTATGGCGGATAGTTGTTGTTCAGGCGCACTTCTCGAAGGAGCAACGGAAATCATTGGAAATAGTACTCGATTCCCTGTGACTGACAAACTTCCACCACCAATGACTGAACATGTAGATAAAAAAGTGGTTGACCCGACAAATTGCCGTAAACTTGGGATATTGGTCTCCGCTTGTCAAAGTGGTGAAGTGATTGGCAGTAAATATTGTGCCGTTAGAAAGAAAAACGTTTCCTATTTTACCAACACACTCATTTCAACAATCAAGAAATTTGGAGTCAATATCTCCAACAAATTTCTAGTTGAGGAGATAACAAAGGTTTATGCCGAGGAAGGAATAACACGGGCGTCACCGGGATTATATTGCGATGAAAGTCAGATCAACTTGAAATTGTTAAGTCTTGAAGAGATTCCACACTTGAGGCCTACAGAGTACAAGAGATCATGGTTTCCTAGAAACCGCAGGAGGACTGTTAACCGTGCATATGGCGCAGTTTTGTCTGGAGGTGCGCTGTTGGGGAAAGGTTTGTATATAGGATCATTTGGGCTTTTTTGGTTGAAGAGCAAAAGATAA 1065 0.3878 MGKKKKNKNKNKNKKKKNKNKNKNKNKNKKKALLVALSYRDNEKRSLGRAPIRSIGYMKRLLMDEFKFCQSDIKLVTDELGKTPTDDEIIIHLLKLLENAKPGDVLFFYYIGHGGRRESKNYNNNSGFIEYISLGMNALGVRTVIPDYTLRQLVEPLPQGCSFTFMADSCCSGALLEGATEIIGNSTRFPVTDKLPPPMTEHVDKKVVDPTNCRKLGILVSACQSGEVIGSKYCAVRKKNVSYFTNTLISTIKKFGVNISNKFLVEEITKVYAEEGITRASPGLYCDESQINLKLLSLEEIPHLRPTEYKRSWFPRNRRRTVNRAYGAVLSGGALLGKGLYIGSFGLFWLKSKR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02702 354 Coils Coil 4 31 - -
Trre9g02702 354 Gene3D - 299 337 - -
Trre9g02702 354 MobiDBLite consensus disorder prediction 1 31 - -
Trre9g02702 354 PANTHER METACASPASE-4 26 288 - -
Trre9g02702 354 Gene3D - 1 298 - -
Trre9g02702 354 Pfam Caspase domain 29 286 IPR011600 GO:0004197|GO:0006508
Trre9g02702 354 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02702 Trre-Chr9 34165833 34168915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02702 298 335 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 73.684 2.72e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02702 - - tpra:123904419 386.341