Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02696 ATGAGCGATCACTTGGTACTCATCGTTGACCAACTCGTCAGCCCAGTTTCTGTTAACCCTGCTCACCTTCCTTCCGAATCATCGCCATCTCCACCTACCGTCGATAAAGCTTCCGGATCATCCGGATCTGCTTCATCGACGGAGAATCGGGATGGCAATGATTGTCATGATGAAGAGGAGCCGTTGATCCAGATGGTCGAGTGCCGTATCTGTCAGGAAGAAGATAGCGTTTCCAATTTGGAGACTCCTTGCGCCTGTAGCGGTAGTCTCAAGTATGCCCACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATTACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCCCCACCACCTCGTCCTAACCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGACTATTGGCGATTGCCGAGGCAGAACGTCAATTCCTGGATGCCGAATATGATGAGTATGCTGCTTCTAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTTCTGCGGCATGCACTTTCTGTAACAGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGACGACAAAGACAAGAGGCAGCGGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGTAGAGGCCTACACTTTGCGATAGCACCAGCACCAGCACCAGGACCTACAGTACAGCAAGAACAAGTGTAG 870 0.4839 MSDHLVLIVDQLVSPVSVNPAHLPSESSPSPPTVDKASGSSGSASSTENRDGNDCHDEEEPLIQMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLNSGQRRGLHFAIAPAPAPGPTVQQEQV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02696 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 119 IPR013083 -
Trre9g02696 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 248 IPR033275 -
Trre9g02696 289 MobiDBLite consensus disorder prediction 18 56 - -
Trre9g02696 289 SUPERFAMILY RING/U-box 66 118 - -
Trre9g02696 289 Pfam Protein of unknown function (DUF3675) 119 238 IPR022143 -
Trre9g02696 289 CDD RING_CH-C4HC3_MARCH 68 114 - -
Trre9g02696 289 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Trre9g02696 289 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Trre9g02696 289 FunFam RING/FYVE/PHD zinc finger protein 56 124 - -
Trre9g02696 289 Coils Coil 156 176 - -
Trre9g02696 289 SMART ringv_2 67 114 IPR011016 GO:0008270
Trre9g02696 289 MobiDBLite consensus disorder prediction 18 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02696 Trre-Chr9 34096082 34099305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02696 67 143 C3H Transcription Factor Family AT2G37950 35.955 1.91e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02696 - - gmx:100779674 432.95