Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02682 ATGGTTCATGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCATCTCAATCGTACACTTGAAGGCTTAAACAATTCAAACAAAACATGTTCACCACATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCTCAAGATTTCAATTTCATAGTGCAAACCAATGTCATTGAGATGATAAGAAACATTTTAGCCATCAATATGTATTTCATGAAACACAACAAAGAAACAAACGAAGGGTTGTTTCCAAGTTGGTTTTCTAGGCATGAGAAGAATCTTTTACAGACTAACTCTCCAATAAAGTTCAATCTTGTGGTTGCAAAAGATGGTTCTGGACATTTTAAGACTGTGCAAGCTGCTTTGGATGCTGCTGCTAAGAGAAAATTTAAGACTAGATTTGTGATACATGTGAAGAAAGGTGTTTATAGAGAGAATATTGAGGTTGCTGTTCATAATGATAATATTATGTTGGTTGGTGATGGGATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACCACTTATAGCTCTGCAACAGCAGGTATTGACGGACTTCACTTCATTGCATGTGACATCACCTTCCAAAACACTGCCGGTCCACACAAGGGCCAAGCCGTAGCACTTCGATCAGCCTCTGATCTCTCAGTATTCTACCGTTGTGCCATATCAGGTTATCAAGATACCTTAATGACTCATGCACAACGCCAGTTTTATCGACAATGCTACATCTATGGCACCGTAGACTTCATATTTGGTAACGCTGCAGTGGTATTCCAAAATTGTAACATTTTTGCAAGAAAGCCTTTAGATGGGCAAGCTAACATGATCACTGCCCAATACCTTCTTGATTTAAAGCCTGTCGTCGACAAGTACAATACCTTCTTGGGCCGGCCTTGGCAACAATACTCAAGGGTTATGGTAATGAAAACTTTTATGGACACTTTAGTGAGCCCATTGGGTTGGTCTCCATGGGGTGACACTGATTTTGCTCAAGACACATTGTATTATGCTGAGTATGAAAATTATGGGCCTGGCTCATCAACAAAAGAGAGAGTGAAATGGCCTGGTTATCATGTGATAACAAATGCAAATGAAGCCTCAAAGTTTACAGTTACTGGACTCCTTGCTGGCCCAAGATGGTTGGCTACAACTACTGTACCATTTACATCTGGTCTTTGA 1236 0.3916 MVHGDCLKLFENTIFHLNRTLEGLNNSNKTCSPHDAQTWLTTSLTNIETCKSGALELNAQDFNFIVQTNVIEMIRNILAINMYFMKHNKETNEGLFPSWFSRHEKNLLQTNSPIKFNLVVAKDGSGHFKTVQAALDAAAKRKFKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIACDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQYLLDLKPVVDKYNTFLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYAEYENYGPGSSTKERVKWPGYHVITNANEASKFTVTGLLAGPRWLATTTVPFTSGL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02682 411 ProSitePatterns Pectinesterase signature 2. 262 271 IPR033131 -
Trre9g02682 411 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 84 IPR035513 -
Trre9g02682 411 Pfam Pectinesterase 302 396 IPR000070 GO:0030599|GO:0042545
Trre9g02682 411 Pfam Pectinesterase 117 298 IPR000070 GO:0030599|GO:0042545
Trre9g02682 411 Gene3D - 111 411 IPR012334 -
Trre9g02682 411 PANTHER PECTINESTERASE 4 401 - -
Trre9g02682 411 Pfam Plant invertase/pectin methylesterase inhibitor 4 80 IPR006501 GO:0004857
Trre9g02682 411 SUPERFAMILY Pectin lyase-like 113 410 IPR011050 -
Trre9g02682 411 CDD PMEI-like_3 4 86 - -
Trre9g02682 411 FunFam Putative pectinesterase 57 115 306 - -
Trre9g02682 411 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 81 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02682 Trre-Chr9 33725361 33727103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02682 2 411 Carbohydrate Esterase AT5G51500 56.849 2.48e-178 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02682 K01051 - gmx:100806133 642.114