Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02681 ATGCAAAAAGAAGCACAAGAAAACTCTCATCAAAATTCATCGGTGCATAAAATGGTTCATGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCATCTCAATCGTACACTTGAAGGCTTAAACAATTCAAACAAAACATGTTCACCACATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCTCAAGATTTCAATTTCATAGTGCAAACCAATGTCATTGAGATGATAAGAAACATTTTAGCCATCAATATGTATTTCATGAAACACAACAAAGAAACAAACGAAGGGTTGTTTCCAAGTTGGTTTTCTAGGCATGAGAAGAATCTTTTACAGACTAACTCTCCAATAAAGTTCAATCTTGTGGTTGCAAAAGATGGTTCTGGACATTTTAAGACTGTGCAAGCTGCTTTGGATGCTGCTGCTAAGAGAAAATTTAAGACTAGATTTGTGATACATGTGAAGAAAGGTGTTTATAGAGAGAATATTGAGGTTGCTGTTCATAATGATAATATTATGTTGGTTGGTGATGGGATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACCACTTATAGCTCTGCAACAGCAGGTATTGACGGACTTCACTTCATTGCATGTGACATCACCTTCCAAAACACTGCCGGTCCACACAAGGGCCAAGCCGTAGCACTTCGATCAGCCTCTGATCTCTCAGTATTCTACCGTTGTGCCATATCAGGTTATCAAGATACCTTAATGACTCATGCACAACGCCAGTTTTATCGACAATGCTACATCTATGGCACCGTAGACTTCATATTTGGTAACGCTGCAGTGGTATTCCAAAATTGTAACATTTTTGCAAGAAAGCCTTTAGATGGGCAAGCTAACATGATCACTGCCCAATACCTTCTTGATTTAAAGCCTGTCGTCGACAAGTACAATACCTTCTTGGGCCGGCCTTGGCAACAATACTCAAGGGTTATGGTAATGAAAACTTTTATGGACACTTTAGTGAGCCCATTGGGTTGGTCTCCATGGGGTGACACTGATTTTGCTCAAGACACATTGTATTATGCTGAGTATGAAAATTATGGGCCTGGCTCATCAACAAAAGAGAGAGTGAAATGGCCTGGTTATCATGTGATAACAAATGCAAATGAAGCCTCAAAGTTTACAGTTACTGGACTCCTTGCTGGCCCAAGATGGTTGGCTACAACTACTGTACCATTTACATCTGGTCTTTGA 1287 0.3893 MQKEAQENSHQNSSVHKMVHGDCLKLFENTIFHLNRTLEGLNNSNKTCSPHDAQTWLTTSLTNIETCKSGALELNAQDFNFIVQTNVIEMIRNILAINMYFMKHNKETNEGLFPSWFSRHEKNLLQTNSPIKFNLVVAKDGSGHFKTVQAALDAAAKRKFKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIACDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQYLLDLKPVVDKYNTFLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYAEYENYGPGSSTKERVKWPGYHVITNANEASKFTVTGLLAGPRWLATTTVPFTSGL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02681 428 Pfam Plant invertase/pectin methylesterase inhibitor 12 97 IPR006501 GO:0004857
Trre9g02681 428 ProSitePatterns Pectinesterase signature 2. 279 288 IPR033131 -
Trre9g02681 428 PANTHER PECTINESTERASE 9 418 - -
Trre9g02681 428 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 10 98 IPR035513 -
Trre9g02681 428 FunFam Putative pectinesterase 57 132 323 - -
Trre9g02681 428 CDD PMEI-like_3 8 103 - -
Trre9g02681 428 Gene3D - 128 428 IPR012334 -
Trre9g02681 428 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 101 IPR035513 -
Trre9g02681 428 Pfam Pectinesterase 134 315 IPR000070 GO:0030599|GO:0042545
Trre9g02681 428 Pfam Pectinesterase 319 413 IPR000070 GO:0030599|GO:0042545
Trre9g02681 428 SUPERFAMILY Pectin lyase-like 130 427 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02681 Trre-Chr9 33725361 33727154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02681 8 428 Carbohydrate Esterase AT5G51500 56.416 4.77e-179 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02681 K01051 - gmx:100806133 654.44